Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_B10_e362_04.seq
(1480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 31 0.53
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 29 1.2
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 29 1.6
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 2.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 2.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 2.2
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 5.0
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 5.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 27 5.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 5.0
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 6.6
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 27 8.7
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 30.7 bits (66), Expect = 0.53
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +3
Query: 699 HTVEVIKEQNGSAYKIKTNINFEDIPNKIILGKTTNGKRLVAKVVKSRKP----MTFLKD 866
H + ++E A K + + NKII + N K + S + +T K
Sbjct: 386 HLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRNNSLSFQATAGELTQCKQ 445
Query: 867 YPKPKLSGTDLSNSQFIGVLNTXYVLMG 950
P+P+++G D NS + G N L+G
Sbjct: 446 LPQPRITGNDQENSHYTGAGNNCLELVG 473
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Frame = +3
Query: 651 QDKVNLNASSNDVS-MDHTVEVIKEQNGSAYK-IKTNINFEDIP-NKIILGKTTNGK--- 812
QD + +N + D + + V Q Y +K N + P +K+ +G TN +
Sbjct: 307 QDVIPINGNIPDPAHVKDNVRAASIQRSLEYMGLKPNTSIVSYPIDKVFIGSCTNSRIED 366
Query: 813 -RLVAKVVKSRKPMTFLKD 866
RL A VVK RK +KD
Sbjct: 367 LRLAAAVVKGRKVAANVKD 385
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 564 ENLKIEMDNITDATENHAECCEKQEIVFQQDKVNLNASSNDVSMDHTVEVIKEQNGSAYK 743
E K+ +++ +AT + E Q +Q L+ S + +DH I E+NG ++
Sbjct: 87 EGQKLITESLINATTDQNESQASQA---KQSSAQLSDSESGYPLDHEEMRISEENGPSHI 143
Query: 744 IKTNINFEDIPNKIILGKTTNGKRLVAKVVKSRKP 848
N F DI N T+ + + +K+ S P
Sbjct: 144 ENLNF-FSDIDN----FSKTSAEEIASKLFSSVSP 173
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 28.7 bits (61), Expect = 2.2
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Frame = +3
Query: 540 DTTFDNGNENLKIEMD-------NITDATENHAECCEKQEIVFQQDKVNLNASSNDVSMD 698
+TT NG E++KI+ D + +A + ++ E++ + + + SN++ D
Sbjct: 40 ETTSSNGAEDIKIQRDVGDDKDLDDKEANDKSSKGLEEESDSKDRKTIETDQPSNNIG-D 98
Query: 699 HTVEVIKEQNGSAYK-IKTNINFEDIPNKIILGKTTNGKRLVAKVVKSRKPMTFLKDYPK 875
+ ++ NG+A K K + P +L K + + VV K MT + K
Sbjct: 99 IKSQKSEKSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESK-MTSVARKSK 157
Query: 876 PKLSGT 893
PK +GT
Sbjct: 158 PKRAGT 163
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 373 FSFDSKSIQPFLSKVLYWSSLIVTSAQSPDCLLLSLTPVTLFISEFSGV-NSYIATSSIL 197
F F S S Q V+ SS I + C L TP++ F++ +S V +SY+ T+ L
Sbjct: 984 FKFKSLSYQREKMGVVELSSNISLLSVENICKQLQTTPLSFFLTAWSTVLSSYLKTNDFL 1043
Query: 196 SSCVL 182
V+
Sbjct: 1044 VGTVV 1048
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 408 ITTNDKLIQKL--RNESNNFTEIDANSIGRAETVPNINHVEYYNQYDTTFDNGNE 566
ITTN+K + NES N T I+ G V N+N+ + D +N E
Sbjct: 52 ITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEE 106
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 319 SSLIVTSAQSPDCLLLSLTPVTLFISEFSGVNSYIATSSILS 194
SSL S+ S D L S+TP T+ S S V++ A+++I S
Sbjct: 167 SSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISS 208
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 5.0
Identities = 26/100 (26%), Positives = 43/100 (43%)
Frame = +3
Query: 171 DVNTNTQEERIEDVAIYELTPENSLINNVTGVNESNKQSGDCAEVTISDDQYKTFERNGW 350
DV + T E D IYE+ + ++G+ + S D A V + D FER
Sbjct: 244 DVASTTFES---DKKIYEIGDAPGHRDFISGMI-AGASSADFA-VLVVDSSQNNFERGFL 298
Query: 351 ILLESNEKIFLLNTLGLHDITTNDKLIQKLRNESNNFTEI 470
++ E +LL LG+ +I + + + + F EI
Sbjct: 299 ENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEI 338
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 60 LQXIRTRLYGNLFQFQXEYILPSTDSNVYTNSYLLESDV 176
LQ + +YGN ++ + E++L S V T + SDV
Sbjct: 152 LQIVMFNIYGNQYESREEHLLLSLFQMVLTTEFEATSDV 190
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 105 QXEYILPSTDSNVYTNSYLLESDVNTNTQEERIEDVAIYEL 227
+ EYI +TD ++ + Y S + + TQ ER + +A++ L
Sbjct: 334 EDEYIDVNTDDSLESAEYRWRSHMRSMTQFERAQQIALWLL 374
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 6.6
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Frame = +3
Query: 111 EYILPSTDSNVYTNSYLLESDVNTNTQEERIEDVA----IYELTPENSLINNVTGVN--E 272
E + +T S ++ Y+LE++ N QEE ED + I + E+ NV N E
Sbjct: 3 EMLNENTSSTSLSSFYVLENETIFNVQEEMEEDGSESGNIQKTLLEDPCPENVNDENEDE 62
Query: 273 SNKQSGDCAEVTISDDQYKTFER----NGWILLESNEK 374
N+ S + + + +++ + +IL +S EK
Sbjct: 63 QNRSSRSSSPLVKHEQRHRMYNLKEVIKSFILTKSKEK 100
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 803 EWEKISRKGGKIKETNDISERLSXTQIKWDR 895
E EK +K K+KET +E L+ T+ W R
Sbjct: 244 ESEKKEKKTKKVKETTTETEELNKTKPIWTR 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,831,306
Number of Sequences: 5004
Number of extensions: 93094
Number of successful extensions: 287
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 824584384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -