Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B09_e354_03.seq
         (1496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      327   1e-89
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)                      30   5.5  
SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  327 bits (804), Expect = 1e-89
 Identities = 154/242 (63%), Positives = 187/242 (77%)
 Frame = +3

Query: 168 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 347
           +D  K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 348 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 527
            DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 528 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 707
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K  II
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182

Query: 708 CVEDLIHEIFTVGEKFKYASNFLWPFXLNNPTGGWRKKTIHYVDGGDFGNREDKVXELLX 887
           CVEDLIHEIFTVGE FK ASNFLWPF L++P GG+RKKT H+V+GGD GNREDK+  L+ 
Sbjct: 183 CVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVR 242

Query: 888 RM 893
            M
Sbjct: 243 VM 244


>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
          Length = 119

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 701 VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQ 591
           VL A +LLDE +G DRD  P Q G+ A      D  Q
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRAHWSDSEDGAQ 39


>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 701 VLFAKSLLDE*VGGDRDTLPVQFGETA 621
           VL A +LLDE +G DRD  P Q G+ A
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRA 29


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 651 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 505
           HA   V   R   P   +S  + +P Q  ++RY A S  PC  ER   C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,519,176
Number of Sequences: 59808
Number of extensions: 669763
Number of successful extensions: 1693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4847701901
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)