Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B09_e354_03.seq
         (1496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   309   3e-84
Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical pr...    29   8.5  
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   8.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  309 bits (759), Expect = 3e-84
 Identities = 138/241 (57%), Positives = 184/241 (76%)
 Frame = +3

Query: 174 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 353
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 354 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 533
            +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 534 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICV 713
           AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC+
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183

Query: 714 EDLIHEIFTVGEKFKYASNFLWPFXLNNPTGGWRKKTIHYVDGGDFGNREDKVXELLXRM 893
           EDL HEI TVG  FK A+NFLWPF LNNPTGGW KKT H+V+GGDFGNRED++  LL +M
Sbjct: 184 EDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243

Query: 894 V 896
           V
Sbjct: 244 V 244


>Z81592-8|CAB04730.1|  365|Caenorhabditis elegans Hypothetical
           protein T16G1.8 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -3

Query: 234 VPPSFY--GASRLIPEQLATSYCPLYPSQVFSRPQPSFL*SQPS-CCGIKLPRGTLVPNX 64
           VP  FY  G S  IP   +    P Y +     P P  L S PS    +  P  +L P+ 
Sbjct: 74  VPSPFYQSGWSNPIPSYASAPALPSYSTAYSMAPPPLILPSSPSYVAPVSAPSYSLTPSI 133

Query: 63  LQPG 52
             PG
Sbjct: 134 SIPG 137


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +3

Query: 690 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFXLNNPTGGWRKKTIHYVDGGDFGNREDK 869
           +KQ II  ++ + EIF+  EKF   SN +W   ++NP   W    I     G    +  K
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRILTQLFGKQCTKVMK 127

Query: 870 VXELLXRM 893
           + ELL ++
Sbjct: 128 LSELLDQL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,953,460
Number of Sequences: 27780
Number of extensions: 492441
Number of successful extensions: 1297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)