Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B07_e338_03.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    76   2e-14
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   1.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   5.2  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    27   9.2  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    27   9.2  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   9.2  

>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 60/213 (28%), Positives = 98/213 (46%), Gaps = 5/213 (2%)
 Frame = +2

Query: 89  YQKVHGAFLTIIRNTNINLLLSREQILGS--LHIEGMLELVDTYFIMEEYEQAELMLEMI 262
           YQ+V   F   ++  + N LL    +L S   HI+ +L++ +   I+++    EL  E++
Sbjct: 264 YQEVQETFEYYVQTYDPNNLL---MLLRSHPFHIDTLLQVSE---IIDQQGDHELSAELV 317

Query: 263 I-GCLQYTA--HSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKM 433
             G   + +  H  F L     RL +    NR  F  I RY+  L ++   RT  E  K 
Sbjct: 318 ARGLYAFDSILHPRFNLATGATRLPFAIPSNRRLFLCIWRYLQSLQSRGCWRTVFEFCKA 377

Query: 434 LLNLDPSDPLKMFLIIEIVALRAFEHQWLVDLIDTIRGKEKLPEFIVSLKYSYALARFHI 613
           LL  D SDP  +   I+I ALR  E  W++D  + +    K+ +   ++ YS ALA F++
Sbjct: 378 LLQFDMSDPYAIGTCIDIYALRRREFAWIIDFANYLENSNKISD-TPNMLYSSALAMFYV 436

Query: 614 AYKKKGDMSEVDTLLQETILDCPYVAKAILKLL 712
                GD ++    +       PY+   +L  L
Sbjct: 437 ----HGDTTDTRASMLAAFERAPYMLSELLDTL 465


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +2

Query: 482 EIVALRAFEHQWLVDLIDTIRGKEKLPEFIVSLKYSYALARFHIAYKKKGDMSEVDT 652
           E+V LR  EH  ++ LID I  +E+L  F+V ++Y      F     +KG  +E DT
Sbjct: 58  ELVLLRLIEHPNVLQLIDVISAQEQL--FVV-VEYMPGGELFD-CMLRKGSFTEQDT 110


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 302  LGNPDVRLEYKYLENRPFFTTILRYIYLLSN 394
            L  P+V+ + KYL+ R +F+ +L  + L+ N
Sbjct: 1001 LSTPNVQADEKYLKLRCYFSQLLEKVLLVQN 1031


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 328 IQVFRESSILHYNFEIHISVIKQ 396
           I  FRES I H N EI + V +Q
Sbjct: 208 IAAFRESKISHLNNEIDVDVFEQ 230


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 310 SGRTFGIQVFRESSILHYNFEIHISVIK 393
           S  TFGI +  + S  H N  +HIS ++
Sbjct: 35  SSTTFGIYLCLDCSAAHRNMGVHISFVR 62


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 68  IRHEAGKYQKVHGAFLTIIRNTNINLLLSREQILGSLHIE 187
           ++H+  K ++ HG F  I+R ++I+     + I  S +IE
Sbjct: 3   VQHKTAKIEEDHGLFQPILRPSDISKTTDTKFIQSSPYIE 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,119,693
Number of Sequences: 5004
Number of extensions: 107834
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)