Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B07_e338_03.seq
         (1545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614...    76   9e-14
10_08_0540 + 18635647-18635916                                         29   9.9  

>09_04_0726 +
           19758916-19759098,19759774-19760318,19760581-19761492,
           19762067-19762328
          Length = 633

 Score = 75.8 bits (178), Expect = 9e-14
 Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 7/186 (3%)
 Frame = +2

Query: 179 HIEGMLELVDTYFIMEEYEQAELMLEMIIGCLQYTAHSNFTLGNPDVRLEYKYLENRPFF 358
           H E +L   + +    E++ +   +E  +  L+   H  F+  + + +L+Y +  N+PFF
Sbjct: 279 HPESLLTFAELFKYSGEHQSSADAVEKCLFALECAWHPLFSPLHSNCQLKYSHDTNKPFF 338

Query: 359 TTILRYIYLLSNKSHHRTALELSKMLLNLDPSDPLKMFLIIEIVALRAFEHQWLVDLIDT 538
           T +  ++  L  +  HR+ALE+ K LL+LD  DP      I+  ALR+ +++WL    + 
Sbjct: 339 TALFSHMKNLDRRGCHRSALEVCKFLLSLDSDDPKGALFCIDYFALRSQQYKWLEQFAEE 398

Query: 539 IRGKEKLPEFIVSLKYSYALARFHI----AYKKKGDMSEVDT---LLQETILDCPYVAKA 697
            +    L  F  +  +S A+ARF++       +  D S+  T   L+++ ++  P V + 
Sbjct: 399 YQCDNSLWLF-PNFSFSLAIARFYVERDATNGEASDHSDKSTSVDLMKQALMLHPLVLRK 457

Query: 698 ILKLLP 715
           I+   P
Sbjct: 458 IVDKAP 463


>10_08_0540 + 18635647-18635916
          Length = 89

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 622 FISNVESCQCI*ILQANNELWEFLFPTNSIDQVDEPLMFKGPQSHNLYYQE 470
           F +++ESC CI +  A++E  ++    +  +  D PLM   PQ+   YY +
Sbjct: 32  FFASMESCSCIHVHTADDEGDDY----DPEEAKDRPLMLSRPQALPEYYYD 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,562,494
Number of Sequences: 37544
Number of extensions: 725128
Number of successful extensions: 1340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)