Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B07_e338_03.seq
         (1545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7774| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   1e-08
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)          29   7.5  

>SB_7774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +2

Query: 404 HRTALELSKMLLNLDP-SDPLKMFLIIEIVALRAFEHQWLVDLIDTIRGKEKLPEFIVSL 580
           HRTALEL K LL+LDP SDPL   L+I+  AL + ++ +L+ L +       L + + + 
Sbjct: 3   HRTALELCKFLLSLDPDSDPLCALLMIDFFALTSDQYSFLLRLYEEWEHHRNLSQ-LPNF 61

Query: 581 KYSYALARFHIAYKKKGDMSEVDTL 655
            YS A+A+FH++     D ++ D +
Sbjct: 62  AYSVAMAKFHLSRTNNEDKTDADDM 86


>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
          Length = 234

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 674 DCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGVRLVELINLLCKNDIRKMA*TKRV 853
           D    A   LK   G  ++ IEK+I  N    +N+GV+L   + L   +D  K+A TK V
Sbjct: 71  DMVVAAIGALKERNGSSRQAIEKYIKGNYKVGDNVGVQL--KLALKRMSDKGKLAHTKGV 128

Query: 854 G-NGSW 868
           G +GS+
Sbjct: 129 GASGSF 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,503,034
Number of Sequences: 59808
Number of extensions: 808713
Number of successful extensions: 1389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)