Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_B07_e338_03.seq
(1545 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ321703-1|ABC55265.1| 676|Homo sapiens NULP1 protein. 93 2e-18
BC011884-1|AAH11884.1| 676|Homo sapiens transcription factor 25... 93 2e-18
BC009349-1|AAH09349.1| 676|Homo sapiens transcription factor 25... 93 2e-18
BC000959-1|AAH00959.1| 676|Homo sapiens transcription factor 25... 93 2e-18
AB028972-1|BAA83001.1| 550|Homo sapiens KIAA1049 protein protein. 93 2e-18
BC127709-1|AAI27710.1| 166|Homo sapiens LDLRAD1 protein protein. 33 2.8
BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein... 33 2.8
AL353898-2|CAI22662.1| 116|Homo sapiens low density lipoprotein... 33 2.8
AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein... 33 2.8
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 31 8.6
>DQ321703-1|ABC55265.1| 676|Homo sapiens NULP1 protein.
Length = 676
Score = 93.5 bits (222), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)
Frame = +2
Query: 86 KYQKVHGAFLTIIRNTNINLLLSREQILGSLHIEGMLELVDTYFIMEEYEQAELMLEMII 265
+YQ+ FL + + N ++ Q H++ +L+L D E+ E A ++E +
Sbjct: 255 EYQQAQHKFLVAVESMEPNNIVVLLQT-SPYHVDSLLQLSDACRFQEDQEMARDLVERAL 313
Query: 266 GCLQYTAHSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKMLLNL 445
++ H F+L + RL+Y+ ENR F+ + + + L + RTALE K++L+L
Sbjct: 314 YSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSL 373
Query: 446 DP-SDPLKMFLIIEIVALRAFEHQWLVDLI---DTIRGKEKLPEFIVSLKYSYALARFHI 613
+P DPL M L+I+ +ALRA +++L+ L + R +LP F S+ +Y L
Sbjct: 374 EPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQT 433
Query: 614 ---AYKKKGDMSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGV 784
++ + L+Q+ + P V +L+ P + H F A +
Sbjct: 434 DLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPP 493
Query: 785 RLVELINL 808
L +L+NL
Sbjct: 494 ALSQLVNL 501
>BC011884-1|AAH11884.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 93.5 bits (222), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)
Frame = +2
Query: 86 KYQKVHGAFLTIIRNTNINLLLSREQILGSLHIEGMLELVDTYFIMEEYEQAELMLEMII 265
+YQ+ FL + + N ++ Q H++ +L+L D E+ E A ++E +
Sbjct: 255 EYQQAQHKFLVAVESMEPNNIVVLLQT-SPYHVDSLLQLSDACRFQEDQEMARDLVERAL 313
Query: 266 GCLQYTAHSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKMLLNL 445
++ H F+L + RL+Y+ ENR F+ + + + L + RTALE K++L+L
Sbjct: 314 YSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSL 373
Query: 446 DP-SDPLKMFLIIEIVALRAFEHQWLVDLI---DTIRGKEKLPEFIVSLKYSYALARFHI 613
+P DPL M L+I+ +ALRA +++L+ L + R +LP F S+ +Y L
Sbjct: 374 EPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQT 433
Query: 614 ---AYKKKGDMSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGV 784
++ + L+Q+ + P V +L+ P + H F A +
Sbjct: 434 DLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPP 493
Query: 785 RLVELINL 808
L +L+NL
Sbjct: 494 ALSQLVNL 501
>BC009349-1|AAH09349.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 93.5 bits (222), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)
Frame = +2
Query: 86 KYQKVHGAFLTIIRNTNINLLLSREQILGSLHIEGMLELVDTYFIMEEYEQAELMLEMII 265
+YQ+ FL + + N ++ Q H++ +L+L D E+ E A ++E +
Sbjct: 255 EYQQAQHKFLVAVESMEPNNIVVLLQT-SPYHVDSLLQLSDACRFQEDQEMARDLVERAL 313
Query: 266 GCLQYTAHSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKMLLNL 445
++ H F+L + RL+Y+ ENR F+ + + + L + RTALE K++L+L
Sbjct: 314 YSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSL 373
Query: 446 DP-SDPLKMFLIIEIVALRAFEHQWLVDLI---DTIRGKEKLPEFIVSLKYSYALARFHI 613
+P DPL M L+I+ +ALRA +++L+ L + R +LP F S+ +Y L
Sbjct: 374 EPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQT 433
Query: 614 ---AYKKKGDMSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGV 784
++ + L+Q+ + P V +L+ P + H F A +
Sbjct: 434 DLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPP 493
Query: 785 RLVELINL 808
L +L+NL
Sbjct: 494 ALSQLVNL 501
>BC000959-1|AAH00959.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 93.5 bits (222), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)
Frame = +2
Query: 86 KYQKVHGAFLTIIRNTNINLLLSREQILGSLHIEGMLELVDTYFIMEEYEQAELMLEMII 265
+YQ+ FL + + N ++ Q H++ +L+L D E+ E A ++E +
Sbjct: 255 EYQQAQHKFLVAVESMEPNNIVVLLQT-SPYHVDSLLQLSDACRFQEDQEMARDLVERAL 313
Query: 266 GCLQYTAHSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKMLLNL 445
++ H F+L + RL+Y+ ENR F+ + + + L + RTALE K++L+L
Sbjct: 314 YSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSL 373
Query: 446 DP-SDPLKMFLIIEIVALRAFEHQWLVDLI---DTIRGKEKLPEFIVSLKYSYALARFHI 613
+P DPL M L+I+ +ALRA +++L+ L + R +LP F S+ +Y L
Sbjct: 374 EPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQT 433
Query: 614 ---AYKKKGDMSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGV 784
++ + L+Q+ + P V +L+ P + H F A +
Sbjct: 434 DLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPP 493
Query: 785 RLVELINL 808
L +L+NL
Sbjct: 494 ALSQLVNL 501
>AB028972-1|BAA83001.1| 550|Homo sapiens KIAA1049 protein protein.
Length = 550
Score = 93.5 bits (222), Expect = 2e-18
Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)
Frame = +2
Query: 86 KYQKVHGAFLTIIRNTNINLLLSREQILGSLHIEGMLELVDTYFIMEEYEQAELMLEMII 265
+YQ+ FL + + N ++ Q H++ +L+L D E+ E A ++E +
Sbjct: 129 EYQQAQHKFLVAVESMEPNNIVVLLQT-SPYHVDSLLQLSDACRFQEDQEMARDLVERAL 187
Query: 266 GCLQYTAHSNFTLGNPDVRLEYKYLENRPFFTTILRYIYLLSNKSHHRTALELSKMLLNL 445
++ H F+L + RL+Y+ ENR F+ + + + L + RTALE K++L+L
Sbjct: 188 YSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSL 247
Query: 446 DP-SDPLKMFLIIEIVALRAFEHQWLVDLI---DTIRGKEKLPEFIVSLKYSYALARFHI 613
+P DPL M L+I+ +ALRA +++L+ L + R +LP F S+ +Y L
Sbjct: 248 EPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQT 307
Query: 614 ---AYKKKGDMSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGV 784
++ + L+Q+ + P V +L+ P + H F A +
Sbjct: 308 DLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPP 367
Query: 785 RLVELINL 808
L +L+NL
Sbjct: 368 ALSQLVNL 375
>BC127709-1|AAI27710.1| 166|Homo sapiens LDLRAD1 protein protein.
Length = 166
Score = 33.1 bits (72), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 668 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 588
LSP VCPP CP +F+K C +P H+
Sbjct: 115 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 146
>BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 33.1 bits (72), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 668 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 588
LSP VCPP CP +F+K C +P H+
Sbjct: 154 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 185
>AL353898-2|CAI22662.1| 116|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 116
Score = 33.1 bits (72), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 668 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 588
LSP VCPP CP +F+K C +P H+
Sbjct: 65 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 96
>AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 33.1 bits (72), Expect = 2.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 668 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 588
LSP VCPP CP +F+K C +P H+
Sbjct: 154 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 185
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 31.5 bits (68), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 713 AITLKLPSLHMDNQVLSP---AEVCPPHSCPLSFY 618
+I LKLPSL+ D V P A CP H P+ +
Sbjct: 2334 SIPLKLPSLNKDGSVSEPDMAANFCPDHKAPMVLF 2368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,663,776
Number of Sequences: 237096
Number of extensions: 4096806
Number of successful extensions: 6102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6090
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23074645414
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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