Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B06_e330_04.seq
         (1411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    66   1e-11

>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 30/121 (24%), Positives = 66/121 (54%)
 Frame = +1

Query: 157 LDETVSSEDLQKFERIFHEQLHQGKVTHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 336
           +D  +S ++  + +  +  +  Q  +T + +F  AW LVRS     +++G+ L   ++  
Sbjct: 15  IDSIISVDEFLQIKEQYDAE--QPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKD 72

Query: 337 HAEGKRDYLFYLAIGNARIKEYNKALHYVKAFLEIEPANQQVLALERQINKRMEKEGLIG 516
             E + + L+Y+A+ + ++K+Y ++  Y+   L  +P + + L L+ ++   + KEG IG
Sbjct: 73  SPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKEGYIG 132

Query: 517 M 519
           M
Sbjct: 133 M 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,217,425
Number of Sequences: 5004
Number of extensions: 76258
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 782948132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)