Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B06_e330_04.seq
         (1411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0194 - 41896831-41896895,41897377-41897440,41898074-418981...    45   2e-04
09_02_0417 - 8915604-8916779,8916863-8917270                           33   0.41 
05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595...    33   0.41 
02_01_0106 - 780984-781279,781355-781578,781684-781920,782023-78...    31   2.2  
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853...    30   5.0  
01_01_0256 - 2083973-2084816,2084922-2086093                           30   5.0  

>01_07_0194 -
           41896831-41896895,41897377-41897440,41898074-41898195,
           41898304-41898433,41899659-41899751
          Length = 157

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 259 AWCLVRSKYPTDIRKGILLLKELFNSHAEG--KRDYLFYLAIGNARIKEYNKALHYVKAF 432
           +W LV S+   D+ +GI +L+            R+ L+ LA+G+ R  +Y ++   ++  
Sbjct: 54  SWALVHSRNTDDVNRGIAMLQASLGGSKSPLEAREKLYLLAVGHYRNGDYPRSRQLLEHC 113

Query: 433 LEIEPANQQVLALERQINKRMEK 501
           LEI+P   Q L+L++ +  ++ K
Sbjct: 114 LEIQPGWGQALSLKKTVEDKIAK 136


>09_02_0417 - 8915604-8916779,8916863-8917270
          Length = 527

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 148 EDVLDETVSSEDLQKFERIFHEQLHQGKVTHK-AQFEYAWCLVRSKYPTDIRKGILLLKE 324
           E V+ E  S+    +   + H + H  K+  K A F   WC V++KYP+   +G+ L+ +
Sbjct: 151 EKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDK 210

Query: 325 LFNSHAEGKR 354
            +  + E  R
Sbjct: 211 TWLMYNEEAR 220


>05_04_0140 -
           18358997-18359082,18359255-18359318,18359469-18359583,
           18360101-18360216,18360420-18360541,18360628-18360757,
           18361328-18361420
          Length = 241

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +1

Query: 259 AWCLVRSKYPTDIRKGILLLK-ELFNSHAE-GKRDYLFYLAIGNARIKEYNKALHYVKAF 432
           +W LV SK   D+ +GI +L+  L  S++    R+ L+ LA+G+ R  +Y ++   V   
Sbjct: 54  SWALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYLLAVGHYRNGDYPRSRQLVDRC 113

Query: 433 LE 438
           LE
Sbjct: 114 LE 115


>02_01_0106 -
           780984-781279,781355-781578,781684-781920,782023-782126
          Length = 286

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 205 KSSRIFVNLPKILSHLRRPPC*RIGIGNEFIIISTG 98
           K ++ ++ L ++   L RPPC  +GIG +  II  G
Sbjct: 211 KETKEWIMLGRLSDKLTRPPCELVGIGRKIYIIGRG 246


>04_04_0639 +
           26883810-26883821,26884131-26884307,26885276-26885339,
           26886614-26887734,26888193-26888481,26888528-26888658,
           26888910-26889133,26889220-26889286,26889744-26889803,
           26889896-26889979,26890290-26890301
          Length = 746

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 391 IKEYNKALHYVKAFLEIEPANQQVLALERQINKRMEK 501
           +KEY+KAL   +A L+ +P NQ++L   R+  +R+ K
Sbjct: 644 MKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINK 680


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 620 AFIKNAKCYFL-LEANAIPSPIMPPRASTVPPATAIPIKP 504
           AF  N   Y++ +  NA  +  MPP A+ VPP T +   P
Sbjct: 520 AFDPNTGMYYIPMRTNAPQAYSMPPGAAAVPPPTLVDTTP 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,989,261
Number of Sequences: 37544
Number of extensions: 499329
Number of successful extensions: 1405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4455209472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)