Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B06_e330_04.seq
         (1411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.41 
SB_45663| Best HMM Match : TPR_2 (HMM E-Value=0.032)                   32   0.96 
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    31   2.2  
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.9  
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     30   5.1  
SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)                 29   8.9  

>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 33.5 bits (73), Expect = 0.41
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -3

Query: 56 PAARGIH*XLERPPPR 9
          PAARGIH  LERPPPR
Sbjct: 14 PAARGIHYVLERPPPR 29


>SB_45663| Best HMM Match : TPR_2 (HMM E-Value=0.032)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +1

Query: 298 RKGILLLKELFNSHAEGKRDYLFYLAIGNARIKEYNKALHYVKAFLE 438
           +K   +LK++   ++  K + ++YL + + + K+YN+A+ Y+K   E
Sbjct: 69  KKAATILKKIEGGNSVFKEEAIWYLGLLSLKQKKYNEAIDYLKLITE 115


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 605  AKCYFLLEANAIPSPIMPPRASTVPPATAIPIKP 504
            A+C +L+    +  P  PP A++ P ATA+ I P
Sbjct: 924  ARCIYLIRHRTLHLPHTPPHATSTPYATALCIYP 957


>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 22/88 (25%), Positives = 41/88 (46%)
 Frame = +1

Query: 166 TVSSEDLQKFERIFHEQLHQGKVTHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNSHAE 345
           T+S + +  F   F E++H      ++  +    +V S  P     G+ L+KEL+ S  +
Sbjct: 2   TLSRKPVNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAGLDLVKELYKS--D 59

Query: 346 GKRDYLFYLAIGNARIKEYNKALHYVKA 429
            KR ++F+    +  ++ Y   L  V A
Sbjct: 60  EKRLFVFWRRFQDVWMQLYGSRLATVAA 87


>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 139 VNMEDVLDETVSSEDLQKFERIFHEQLHQGKV 234
           V  EDVL+ +VSSED+ +F     ++L Q K+
Sbjct: 440 VTDEDVLNASVSSEDMNRFRMEVMQRLTQDKI 471


>SB_53419| Best HMM Match : TPR_2 (HMM E-Value=4.2e-06)
          Length = 378

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 12/43 (27%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
 Frame = +1

Query: 367 YLAIGN--ARIKEYNKALHYVKAFLEIEPANQQVLALERQINK 489
           +LA+G+  +++++Y+KAL Y++   +++P N+ +  L+ ++ K
Sbjct: 30  HLALGSYYSKMRDYSKALKYLENAEKLDPGNKDIAWLKVKVLK 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,527,009
Number of Sequences: 59808
Number of extensions: 562059
Number of successful extensions: 2163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4507306368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)