Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B06_e330_04.seq
         (1411 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12390.1 68418.m01457 expressed protein                             64   2e-10
At3g57090.1 68416.m06356 expressed protein                             52   7e-07
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    29   5.6  

>At5g12390.1 68418.m01457 expressed protein
          Length = 167

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 32/89 (35%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +1

Query: 259 AWCLVRSKYPTDIRKGILLLKELF--NSHAEGKRDYLFYLAIGNARIKEYNKALHYVKAF 432
           +W LV SK P+DI++GI +L+ L   ++ A   R+ L+ LA+G  R  +++++   ++  
Sbjct: 59  SWALVHSKMPSDIQRGIAMLEALVVNDTSAMKLREKLYLLALGYYRSGDFSRSRDCIERC 118

Query: 433 LEIEPANQQVLALERQINKRMEKEGLIGM 519
           LE+EP + Q  AL++ I  R+ K+G+IG+
Sbjct: 119 LEVEPESGQAQALKKAIEDRIVKDGVIGV 147


>At3g57090.1 68416.m06356 expressed protein
          Length = 170

 Score = 52.4 bits (120), Expect = 7e-07
 Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = +1

Query: 259 AWCLVRSKYPTDIRKGILLLKELFNSHAE--GKRDYLFYLAIGNARIKEYNKALHYVKAF 432
           +W LV S+   D+++GI +L+    S A     R+ L+ LA+G  R   Y+++   V   
Sbjct: 57  SWALVHSRQTEDVQRGIAMLEASLESSAPPLEDREKLYLLAVGYYRSGNYSRSRQLVDRC 116

Query: 433 LEIEPANQQVLALERQINKRMEKEGLIGM 519
           +E++   +Q L L++ I  ++ K+G+IG+
Sbjct: 117 IEMQADWRQALVLKKTIEDKITKDGVIGI 145


>At5g39770.1 68418.m04817 repair endonuclease family protein contains
            Pfam PF02732 : ERCC4 domain; similar to MUS81
            endonuclease (GI:16755674) [Mus musculus]; similar to
            repair endonuclease (TIGR:At5g41150) [Arabidopsis
            thaliana]
          Length = 1242

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = -1

Query: 766  YLEKREEVLQMSFSEIITINLL*IKSLATPSNPFLSLSF 650
            ++++  ++ +M+ S++  I L+ + SLA PS  FLS +F
Sbjct: 1135 FVQRCPDLGKMTISDVFAIQLMQVLSLAKPSFGFLSATF 1173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,090,355
Number of Sequences: 28952
Number of extensions: 398026
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3710857920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)