Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B05_e322_03.seq
         (1528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   3.9  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    27   9.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   9.0  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 663 SNNLLFLKYAASKKLPLIISTGMVDKSAVKTIYDIISSEHKQFCLLHXISAY 818
           SN + F  +  S +L  +I   M        +YDI+ +E+   CLL  ISAY
Sbjct: 419 SNTVSFDNFFNSLELIFVI---MSSNGFTDIMYDIMDAEYFVSCLLFIISAY 467


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 LMVITKNIWNFLKVNTVNYSNMLTRSVF 576
           +M  T  I N  KVN VN  N+L+  VF
Sbjct: 170 MMQATTQIQNLYKVNNVNPLNLLSAPVF 197


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 357 IAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDN 473
           + + +I   KD G   V   KT +++   K+YLER  DN
Sbjct: 690 LVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE-DN 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,865,092
Number of Sequences: 5004
Number of extensions: 93738
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 856299168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)