Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B05_e322_03.seq
         (1528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    31   3.2  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     30   4.2  
05_01_0187 + 1349725-1352238                                           30   4.2  
10_08_0808 + 20722479-20722585,20722674-20722959                       30   5.6  
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783...    30   5.6  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   9.7  
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572...    29   9.7  

>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 17  AVAAALXTSGIPRAAGNSARGVHQA 91
           AVAAA+   G+P AA  +A+G+H A
Sbjct: 758 AVAAAMIHEGMPEAAFKTAKGIHDA 782


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 249 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 142
           P R F K  +      +++ RL +N HY   GLST+
Sbjct: 538 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 573


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 249 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 142
           P R F K  +      +++ RL +N HY   GLST+
Sbjct: 501 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 536


>10_08_0808 + 20722479-20722585,20722674-20722959
          Length = 130

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 260 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR 346
           AR   +GGR  WR++ V + R +W + +R
Sbjct: 95  ARGAADGGRPDWRERRVRWRRSAWRREAR 123


>05_06_0094 +
           25477367-25477398,25477516-25477891,25478292-25478315,
           25479069-25481828
          Length = 1063

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -1

Query: 412 NLTQLAPASLAAFISCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTSVP 233
           N+TQ  P S  +F+S +A+  SP    PT       L PP+ TSS + +S   +   SVP
Sbjct: 824 NVTQRTPIS--SFLSGYAVQSSPGLTTPTKFTSLRPL-PPSVTSSHVYSSEDAQPHGSVP 880


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 92   LPDARLVPNXLQPGGXH*XLERPPP 18
            +PDA+LVP+ LQ  G     + PPP
Sbjct: 3509 IPDAQLVPHALQDKGSPRSTQPPPP 3533


>07_01_0747 -
           5724586-5724648,5725229-5725309,5725564-5725656,
           5725775-5725929,5726023-5726131,5726291-5726481,
           5727463-5727614,5728453-5728728,5729415-5729587,
           5730023-5730298,5730839-5730958,5731051-5731176,
           5731629-5731970
          Length = 718

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 QAIQPERGPGFRLFVFMERSLW 249
           QA+ PER PGF L V    SLW
Sbjct: 559 QAVFPERTPGFVLDVLARSSLW 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,254,366
Number of Sequences: 37544
Number of extensions: 635700
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4907691684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)