Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B05_e322_03.seq
         (1528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    31   1.6  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    31   1.6  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    31   2.8  

>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 727 PVDMISGSFFEAAYFRNNKLFESPDPIFIKGTF 629
           P+  ++ +F EA+ F N+K FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 727 PVDMISGSFFEAAYFRNNKLFESPDPIFIKGTF 629
           P+  ++ +F EA+ F N+K FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 463 LMIITILGVKLMVITKNIWNFLKVNTVNYSNMLTRSVFYLLPLLWTWYLSI 615
           + + T+  +KL +ITK I   + +N+VNY  +   S+ +     W +Y S+
Sbjct: 219 IALCTVCALKLKMITKEISTVISINSVNY-YLFWISIIHFSTSFW-YYFSV 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,678,081
Number of Sequences: 27780
Number of extensions: 554599
Number of successful extensions: 1233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)