Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B05_e322_03.seq
         (1528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13940.1 68418.m01630 hypothetical protein                          29   8.1  
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    29   8.1  

>At5g13940.1 68418.m01630 hypothetical protein 
          Length = 395

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +1

Query: 382 LKMLVQAALNSKRLASRRNSRKSI*SALMIITILGVKLMVITKNIWNFLKVNTVNYSNML 561
           +K LV AA+    + S  + +K+     +I  IL   +    K  + F + N V+Y +++
Sbjct: 182 VKFLVSAAIGLVTVVSSVSLKKA--DIRVIAAILSTVVAYCVKTYFTFQR-NLVDYQSLI 238

Query: 562 TRSVF 576
           TRSV+
Sbjct: 239 TRSVY 243


>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 612 DFLVNLKVPFIKIGSGDSNNLLFLKYAASKKLPL 713
           DFLV L++P    GSG+S +L  LK     K P+
Sbjct: 439 DFLVLLEIPCCDNGSGESESLSLLKVRCVYKDPV 472


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,935,806
Number of Sequences: 28952
Number of extensions: 506220
Number of successful extensions: 1069
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4086763008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)