Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B04_e314_04.seq
         (1545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6WTC3 Cluster: O-antigen polymerase; n=1; Shewanella b...    39   0.40 

>UniRef50_A6WTC3 Cluster: O-antigen polymerase; n=1; Shewanella
           baltica OS185|Rep: O-antigen polymerase - Shewanella
           baltica OS185
          Length = 452

 Score = 38.7 bits (86), Expect = 0.40
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -1

Query: 471 IYFLRLAEMKTFFIRNPNYFRKIKVV*VTLTTFNYYQKVSSK-SVHPFWRLVE-TNTKIL 298
           I F+ LA +   F+++  + R  ++  V+LT F     VS+  S HPFW +VE TN  IL
Sbjct: 46  IGFIWLASLGLCFVKDVEFIRLSRLTKVSLTIFVVLAIVSAFFSKHPFWGMVEMTNIGIL 105

Query: 297 KIVF 286
            I F
Sbjct: 106 MIAF 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,015,855,691
Number of Sequences: 1657284
Number of extensions: 17320016
Number of successful extensions: 33194
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32781
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 165344584750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)