Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B04_e314_04.seq
         (1545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    32   1.3  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    31   2.9  
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   3.8  

>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical protein
            C15A11.1 protein.
          Length = 303

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 1257 PXXPXGGPXPSWGAXXPGPXXTPXXXRXXXXXXPPXPGGWGP 1382
            P  P G P P      PGP   P          P  PG  GP
Sbjct: 149  PAGPAGPPGPDGQPGAPGPNGQPGAAGTTSTNEPGSPGPAGP 190


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
            50 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +3

Query: 1257 PXXPXGGPXPSWGAXXPGPXXTPXXXRXXXXXXPPXPGGWGP 1382
            P  P G P P      PGP   P          P  PG  GP
Sbjct: 202  PAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGP 243


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein 20
            protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 1257 PXXPXGGPXPSWGAXXPGPXXTPXXXRXXXXXXPPXPGG 1373
            P  P GGP P      PG    P          PP PGG
Sbjct: 148  PAGPAGGPGPKGPPGPPGGHGEPGPAGRGGPRGPPGPGG 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,237,289
Number of Sequences: 27780
Number of extensions: 459969
Number of successful extensions: 1160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4452547242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)