Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B04_e314_04.seq
         (1545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   7.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 696 FLQLKIEAENAKTFFINSSTYRKTDH*IIF 607
           F+QL    E    FF NS   +K +H +IF
Sbjct: 156 FIQLPPLYEMCPYFFFNSEVLQKANHALIF 185


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 696 FLQLKIEAENAKTFFINSSTYRKTDH*IIF 607
           F+QL    E    FF NS   +K +H +IF
Sbjct: 156 FIQLPPLYEMCPYFFFNSEVLQKANHALIF 185


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 694 FATKNRSRERKNIFHK 647
           FA++  SRE + IFHK
Sbjct: 639 FASQELSREGRRIFHK 654


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 694 FATKNRSRERKNIFHK 647
           FA++  SRE + IFHK
Sbjct: 607 FASQELSREGRRIFHK 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,636
Number of Sequences: 438
Number of extensions: 6205
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)