Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B03_e306_03.seq
         (1631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    31   3.4  

>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = -1

Query: 536 YHPLSSDDLNDFFLNLASAVDRKSFNSFTVTLWARAEG-----VRRKLI--IIKINEVCF 378
           Y  + SD+L++F +NLA   D  ++  F + L    EG     +  K I  + K + + F
Sbjct: 739 YEVVYSDELSEFIMNLAMWEDLPNYEKFKIILKGAKEGTVVQRLEEKAIPFMKKRSHLIF 798

Query: 377 LKTVAKLKREVIFKW 333
           L    K +   + +W
Sbjct: 799 LSNEEKHRESYLIRW 813


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,668,085
Number of Sequences: 37544
Number of extensions: 440530
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5285005748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)