Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_B02_e298_04.seq
         (1455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   4.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   4.3  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    23   4.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 244 PYHMSPYGHPYQFDLH 259


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 76  PYHMSPYGHPYQFDLH 91


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 321 PFHHFQHGSPFQFKFH 368
           P+H   +G P+QF  H
Sbjct: 288 PYHMSPYGHPYQFDLH 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,807
Number of Sequences: 336
Number of extensions: 3666
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 43428200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)