Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_B02_e298_04.seq
(1455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 1e-30
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 64 4e-10
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 4e-08
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 57 4e-08
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37) 57 4e-08
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 56 9e-08
SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 4e-07
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-06
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 8e-06
SB_16477| Best HMM Match : DnaJ (HMM E-Value=8.1e-33) 47 3e-05
SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40) 47 3e-05
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-05
SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-04
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 45 2e-04
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29) 45 2e-04
SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38) 43 5e-04
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 7e-04
SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 43 7e-04
SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37) 42 0.001
SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30) 42 0.001
SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 41 0.002
SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29) 37 0.046
SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056) 32 1.00
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 32 1.3
SB_13154| Best HMM Match : DnaJ (HMM E-Value=7.9e-11) 30 5.3
SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09) 29 9.3
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 9.4
>SB_21411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 131 bits (317), Expect = 1e-30
Identities = 63/91 (69%), Positives = 71/91 (78%)
Frame = +3
Query: 102 RXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDPE 281
R ITKAYRK A KWHPDNY G++KK AEK FIDIAAAKEVLTDP+KRA +D+G DPLDPE
Sbjct: 222 REITKAYRKLAVKWHPDNYKGEDKKKAEKMFIDIAAAKEVLTDPEKRAKYDAGEDPLDPE 281
Query: 282 AQRAGGHGGPFNNPFHHFQHGSPFQFKFHFN 374
+Q+ GG G P H F G+ FQFKFHFN
Sbjct: 282 SQQGGG-GWPQG---HGFPFGNGFQFKFHFN 308
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 63.7 bits (148), Expect = 4e-10
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS-GTDPL 272
+ + I KA+RK A K+HPD G + AE+KF ++A A EVL+D +KR +D G + L
Sbjct: 38 SDKQIKKAFRKMAVKYHPDKNKGKD---AEEKFREVAEAYEVLSDENKRRQYDQFGEEGL 94
Query: 273 DPEAQRAGGHGGPFNNPFHHFQHG 344
GG G FN+ F++F HG
Sbjct: 95 KNNGFGGGGGGFDFNDFFNNFGHG 118
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 56.8 bits (131), Expect = 4e-08
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHG---DEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDP 278
I KAY+K A K HPD + G ++KK+AEK+F ++ A +L+DP K+ +DSG D +
Sbjct: 175 IKKAYKKEALKHHPDRHSGASDEQKKIAEKQFKEVNEAYSILSDPKKKRRYDSGQDLEE- 233
Query: 279 EAQRAGGHGGPFNNPFHHFQ--HGSPFQFKFHF 371
G+G +P FQ G P F F+F
Sbjct: 234 ------GYGMDDFDPNSIFQAFFGGPGGFAFNF 260
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 56.8 bits (131), Expect = 4e-08
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHG---DEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDP 278
I KAY+K A K HPD + G ++KK+AEK+F ++ A +L+DP K+ +DSG D +
Sbjct: 175 IKKAYKKEALKHHPDRHSGASDEQKKIAEKQFKEVNEAYSILSDPKKKRRYDSGQDLEE- 233
Query: 279 EAQRAGGHGGPFNNPFHHFQ--HGSPFQFKFHF 371
G+G +P FQ G P F F+F
Sbjct: 234 ------GYGMDDFDPNSIFQAFFGGPGGFAFNF 260
>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
Length = 238
Score = 56.8 bits (131), Expect = 4e-08
Identities = 36/87 (41%), Positives = 46/87 (52%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDPEAQ 287
I +AYRK A K HPD D K A++KF DI AA EVL D D+R ++D + E
Sbjct: 41 IKRAYRKLAMKLHPDKNKDDPK--AQEKFHDIGAAYEVLADDDQRKIYDQRGE----EGL 94
Query: 288 RAGGHGGPFNNPFHHFQHGSPFQFKFH 368
+ GH ++PF F G F F H
Sbjct: 95 KNAGH-RDHSDPFSSFFGGFGFHFDGH 120
>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
Length = 351
Score = 55.6 bits (128), Expect = 9e-08
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS-GTDPL--DP 278
I KAYRK A K+HPD ++ AE+KF +I+ A EVL+DP K+ ++D G + L P
Sbjct: 20 IKKAYRKQALKYHPDK---NKSPGAEEKFKEISEAYEVLSDPKKKEIYDQYGEEGLKGTP 76
Query: 279 EAQRAGGHG 305
Q GGHG
Sbjct: 77 PPQNGGGHG 85
>SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 53.6 bits (123), Expect = 4e-07
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS-GTDPL 272
+ + + KAY+K A K+HPD ++ AE+KF +IA A EVL+DP KR +FD G + L
Sbjct: 16 SDQELKKAYKKQAFKYHPDK---NKDPGAEEKFKEIAEAYEVLSDPQKREIFDQYGEEGL 72
Query: 273 DPEAQRAG-GHGGPFNNP--FHHFQ-HGSP 350
G G F P F +FQ HG P
Sbjct: 73 KGGVPPPGAGDADGFQMPEGFTYFQFHGDP 102
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 52.0 bits (119), Expect = 1e-06
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLD 275
T+ I K+YRK A K+HPD + DE +F I+ A EVL+D KR ++D G +
Sbjct: 77 TATEIKKSYRKLALKYHPDK-NPDEGD----RFKQISQAYEVLSDEKKRKIYDEGGE--- 128
Query: 276 PEAQRAGGHGGPFNNPFHHF 335
+A + GG GG F++P F
Sbjct: 129 -DAIKGGGEGGGFHSPMDIF 147
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 49.2 bits (112), Expect = 8e-06
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTD-PDKRAMFDSGTD 266
T I K Y+K A KWHPD H D K+ A+K F++I A E+L+ KRA ++ TD
Sbjct: 806 TQEEIKKRYKKLAMKWHPDR-HRDNKEEAQKHFMEIQEAYEILSKLKTKRASKNTRTD 862
>SB_16477| Best HMM Match : DnaJ (HMM E-Value=8.1e-33)
Length = 138
Score = 47.2 bits (107), Expect = 3e-05
Identities = 30/86 (34%), Positives = 41/86 (47%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLD 275
+ + I K+YRK A KWHPD + K+ AE+KF +I+ A EVL+D M G+
Sbjct: 15 SEQDIKKSYRKLALKWHPDK-NPQNKEEAERKFKEISEAYEVLSDYPFGGMAGLGSHRNG 73
Query: 276 PEAQRAGGHGGPFNNPFHHFQHGSPF 353
+ G H P H F F
Sbjct: 74 SDHPMRGFH-HPMRGMHHPFSFSDGF 98
>SB_3383| Best HMM Match : DnaJ (HMM E-Value=3.8e-40)
Length = 250
Score = 47.2 bits (107), Expect = 3e-05
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
+ KAYR+ A +WHPD + ++ AE+KF ++ A EVL+D +KR ++D
Sbjct: 20 VKKAYRRQALRWHPDK-NPTNREHAEEKFKKLSEAYEVLSDKEKRDIYD 67
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 46.4 bits (105), Expect = 6e-05
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +3
Query: 102 RXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDPE 281
+ I KAY + A+K+HPD ++ K A +KF +++ A EVL+D KR +DS +
Sbjct: 73 KEIKKAYFELAKKYHPDT---NKDKSASEKFQEVSEAYEVLSDDGKRKAYDS-----FGQ 124
Query: 282 AQRAGGHGGPF 314
+G GGPF
Sbjct: 125 TDFSGAQGGPF 135
>SB_2261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 45.2 bits (102), Expect = 1e-04
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
+ K YRK A KWHPD + D + + + F +I A +VL+DP +RA +D
Sbjct: 20 LKKTYRKLALKWHPDK-NLDNAEESTRVFREIQQAYDVLSDPQERAFYD 67
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 44.8 bits (101), Expect = 2e-04
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD------- 254
T I K YRK + K+HPD +++ AE KF A A +VL+DP KRA+++
Sbjct: 16 TDADIKKEYRKLSLKYHPDK---NQEPSAEVKFRQAAEAYDVLSDPKKRAIYNQFGEEGL 72
Query: 255 -SGTDPLDPEAQRAGGHGGPFNNPFHHFQHG-SPFQFKF 365
SG D Q HG N F F G +PF F
Sbjct: 73 KSGVPEKDAWTQGYTFHGDA-NRVFREFFGGNNPFSELF 110
>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
Length = 291
Score = 44.8 bits (101), Expect = 2e-04
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 257
T + I KAYRK A K HPD + K A + F ++ A EVLTDP RA F++
Sbjct: 19 TEKEILKAYRKKALKCHPDKNPDNPK--ASELFHKLSKALEVLTDPKARAAFNN 70
>SB_31923| Best HMM Match : DnaJ (HMM E-Value=2.8e-38)
Length = 161
Score = 43.2 bits (97), Expect = 5e-04
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
I KAYR+ A +HPD ++ AE+KF +I+ A +VLTDP +R +FD
Sbjct: 20 IKKAYRRQALIFHPDK---NKNSGAEEKFKEISEAYKVLTDPRQRDIFD 65
>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 42.7 bits (96), Expect = 7e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDP 269
T+ I +AYR+ A K+HPD G E+ F +++ A EVL DP +R FD P
Sbjct: 16 TTDDIRRAYRRLALKYHPDKNAG-----TEENFKEVSEAYEVLCDPQQRERFDKKFAP 68
>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 386
Score = 42.7 bits (96), Expect = 7e-04
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS-GTDPLDPEA 284
I KAYRK A++ HPD + D +KF DI A E+L+DP+KR ++D G L
Sbjct: 21 IKKAYRKLAKELHPDK-NPD----TGEKFKDITFAYEILSDPEKRELYDRYGEKGL---R 72
Query: 285 QRAGGHGGPFNNPFHHFQHGS 347
+ AGG G + H F GS
Sbjct: 73 EGAGGGAGFEDILSHIFGGGS 93
>SB_16146| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
Length = 79
Score = 42.3 bits (95), Expect = 0.001
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
I KAYRK A++ HPD + D +KF DI A E+L+DP+KR ++D
Sbjct: 21 IKKAYRKLAKELHPDK-NPD----TGEKFKDITFAYEILSDPEKRELYD 64
>SB_34242| Best HMM Match : DnaJ (HMM E-Value=9.2e-30)
Length = 238
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSG---TDPLDP 278
I AY K + K HPD + G +KK + F +IA A VL + + R +D G L P
Sbjct: 88 IKDAYYKLSMKHHPDRHQGSDKK--HEVFQEIAEAYSVLGNLESRKQYDRGLIVEGSLAP 145
Query: 279 EAQRAGGHGGP 311
E RA HG P
Sbjct: 146 EHARA-AHGPP 155
>SB_11933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 41.9 bits (94), Expect = 0.001
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSG---TDPLDP 278
I AY K + K HPD + G +KK + F +IA A VL + + R +D G L P
Sbjct: 88 IKDAYYKLSMKHHPDRHQGSDKK--HEVFQEIAEAYSVLGNLESRKQYDRGLIVEGSLAP 145
Query: 279 EAQRAGGHGGP 311
E RA HG P
Sbjct: 146 EHARA-AHGPP 155
>SB_2842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPLDPE 281
I +AYRK + + HPD EK+ A +KF ++ + +L+D +KRA++D + +D E
Sbjct: 31 IKRAYRKISLQVHPDRADKGEKEKATRKFQALSKSYCILSDKEKRAIYDESGE-IDEE 87
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 257
T I +AYR+ + + HPD D+ AE KF + A EVL D DKR +D+
Sbjct: 2495 TQAEIRRAYRRISLQLHPDRNKEDD---AELKFRKLVAVAEVLKDEDKRKRYDT 2545
>SB_47290| Best HMM Match : Ank (HMM E-Value=5.4e-29)
Length = 445
Score = 36.7 bits (81), Expect = 0.046
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 96 TSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
T+ I ++K A++WHPD D + + F + A++VL D RA +D
Sbjct: 300 TNEQINTEFKKKAKEWHPDKKRNDTD--SHEYFARLKKARDVLCDEKMRAKYD 350
>SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056)
Length = 219
Score = 32.3 bits (70), Expect = 1.00
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +3
Query: 162 GDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 254
GD+K+ A KKF IA A E L DP++R +D
Sbjct: 73 GDDKENAIKKFQLIATAYETLKDPEQRNDYD 103
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 108 ITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDK 239
I + YR ++K+HPD GD +KF+ IA A E ++D +K
Sbjct: 1264 IRRQYRSLSKKYHPDKETGD-----PRKFMRIAKAYEAVSDFNK 1302
>SB_13154| Best HMM Match : DnaJ (HMM E-Value=7.9e-11)
Length = 340
Score = 29.9 bits (64), Expect = 5.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 93 QTSRXITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTD 266
+ + + KA RK WHPD GD ++ +I A L D + RA +++ D
Sbjct: 150 ELKKTLKKACRKQLLIWHPDKNGGDAEQAR-----NIIMAYSCLEDDETRARYNNQAD 202
>SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09)
Length = 902
Score = 29.1 bits (62), Expect = 9.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 508 GNVSCIDSGLNNYI*ICYLMLPGGF 434
GN SC+D G+NNY CY+ G F
Sbjct: 217 GNGSCVD-GVNNYTCRCYVGYKGAF 240
>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 24.2 bits (50), Expect(2) = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 117 AYRKAAQKWHPDNYHGDEKKLAEKKFI 197
AYR+ +HPD + EKK K +
Sbjct: 150 AYRRLCVLYHPDKHTDPEKKRVCAKLV 176
Score = 23.0 bits (47), Expect(2) = 9.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 174 KLAEKKFIDIAAAKEVLTDPDKRAMF 251
++A + F + A EVL+DP+ +A++
Sbjct: 196 QVAVQLFSKVQKAYEVLSDPETKAIY 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,467,870
Number of Sequences: 59808
Number of extensions: 411905
Number of successful extensions: 737
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4683373023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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