Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A12_e377_02.seq
         (1488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    30   0.94 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   8.8  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 372 SNLISIIC--XLQFGFFFLCHLIVFLLSVQKPPNIILYRRLC 253
           SN+I +IC     F   F+C++   +LS    P+ I+Y +LC
Sbjct: 197 SNVIWLICFGAPLFLVIFICYIFFTVLSFFNVPDAIVYSKLC 238


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXPGXP 1421
            PP    PPP P P P  P
Sbjct: 470  PPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPG--PXXPXPP 1374
            PP+   P P P P +   P    P P   P  P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 1017 PXXPQGXARGXTXXPPXSXAXSAXXTGXAXPXGPIPPGXPXGXKPIP 1157
            P  P+  + G    PP   A S+       P G  P   P G  P+P
Sbjct: 1050 PPVPKSSS-GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 1457 PXPXPXPXAGXXPKXGGPXPGPXXP 1383
            P P P P     P  GGP P P  P
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,560,366
Number of Sequences: 5004
Number of extensions: 81014
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)