Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A12_e377_02.seq
(1488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 36 0.062
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.58
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 32 1.3
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 31 1.8
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 31 2.3
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 2.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 4.1
09_06_0081 + 20745627-20748144,20748211-20748308 30 5.4
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 5.4
07_01_0080 + 587674-588510 29 7.1
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942... 29 9.4
06_02_0120 + 12055076-12055175,12055322-12055725 29 9.4
>06_03_1384 + 29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 36.3 bits (80), Expect = 0.062
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 1463 GXPXPXPXPXAGXXPKXGGPXPGPXXPXPPRFFKXP 1356
G P P P G P G P P P RFFK P
Sbjct: 70 GVAWPSPYPSGGASPLPAGVSPSPARSTPRRFFKRP 105
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.1 bits (72), Expect = 0.58
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 1466 GGXPXPXPXPXAGXXPKXGGPXPGPXXPXPP 1374
G P P P P A P+ GP PGP P PP
Sbjct: 346 GSGPPPPPPPAAPAAPRPPGPGPGP--PPPP 374
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 1472 PRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPPR 1371
PR P P P P G + GG P P P PR
Sbjct: 361 PRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPR 394
Score = 29.9 bits (64), Expect = 5.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 1474 PPXGGXPPPXPXPXPGXPQXXGAXXXGLXFXXPPGFLRXPRXXXNP 1337
PP P P P PG P GA G PP PR P
Sbjct: 354 PPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPP 399
>04_04_0824 - 28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 1357 GXLKNRGGXGXXGPGXGPPXFGXXPAXGXGXGXGXPP 1467
G + RGG G PG GPP + G G PP
Sbjct: 142 GHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPP 178
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 1366 KNRGGXGXXGPGXGPPXFGXXPAXGXGXGXGXPPRGG 1476
+ RGG G PG GPP + G G G PRGG
Sbjct: 181 QGRGGSGSHHPGGGPPEYQPRDYQGRG---GPRPRGG 214
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 1366 KNRGGXGXXGPGXGPPXFGXXPAXGXGXGXGXPP 1467
+ RGG G PG GPP + G G PP
Sbjct: 163 QGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPP 196
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 332 FFFYVI*LCSCYQYRNXRILFYIEDYVLD*IL---LICGPKFSSSVXKVRVTSLCVIILP 162
F F+++ L + Y+ I ++ D L+ I L+ GPKFS K+ TSL +I P
Sbjct: 1057 FSFHLVILYDNFLYKYMGIEVHLGDETLELINSHELLDGPKFSVKAAKIGTTSLYWLIWP 1116
Query: 161 VIF 153
F
Sbjct: 1117 ASF 1119
>07_03_0792 - 21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = -2
Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGP--XXPXPPR 1371
PP P P P P PK P P P P PPR
Sbjct: 577 PPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPR 613
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -2
Query: 1475 PPRGGXPX--PXPXPXAGXXPKXGGPXPGPXXPXPPRF 1368
PPRG P P P P G P P P P PP +
Sbjct: 491 PPRGNPPSWVPLPPPPGGNAPSWVPPPPQPRGIAPPEY 528
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 4.1
Identities = 18/70 (25%), Positives = 23/70 (32%)
Frame = +3
Query: 954 INGVGPPQARSXXSXYXQXXXPXXPQGXARGXTXXPPXSXAXSAXXTGXAXPXGPIPPGX 1133
+ G+G P A + + P G P T P P+PPG
Sbjct: 1154 VGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGV 1213
Query: 1134 PXGXKPIPFG 1163
P G P P G
Sbjct: 1214 PGGPPPPPGG 1223
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.9 bits (64), Expect = 5.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPPRFFKXPXXXXXS 1338
PP P P P P P PGP PPRF P S
Sbjct: 354 PPAPATPVPMPPTPTRLVPTP--PAPGPPADVPPRFTVSPTTTRPS 397
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 5.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 1475 PPRGGXPXPXPXP-XAGXXPKXGGPXPGPX-XPXPPR 1371
PP+ G P P P P G PK P PGP P PP+
Sbjct: 189 PPKPG-PKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQ 224
>07_01_0080 + 587674-588510
Length = 278
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 1457 PXPXPXPXAGXXPKXGGPXPGPXXPXPPRFF 1365
P P P P +G P P P P P PP F
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPPPPPLF 123
>09_04_0184 -
15393441-15393642,15393789-15393940,15394047-15394208,
15394372-15394585,15395017-15395297
Length = 336
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 529 YYDVKIPICIKXTFSILKKKNW-CFINALNCALKLYFLK 416
+Y +++P+C + L W CF+ L CA+ +FL+
Sbjct: 161 WYILQVPVC-RSYLDPLSLATWMCFLATLQCAVMAFFLE 198
>06_02_0120 + 12055076-12055175,12055322-12055725
Length = 167
Score = 29.1 bits (62), Expect = 9.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 1378 GXGXXGPGXGPPXFGXXPAXGXGXGXGXPPRGG 1476
G G G G GP G + G G G G P GG
Sbjct: 93 GPGYGGGGSGPGYGGGYGSPGYGGGYGSPGYGG 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,190,795
Number of Sequences: 37544
Number of extensions: 637419
Number of successful extensions: 3358
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4756864280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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