Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A12_e377_02.seq
         (1488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.44 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.77 
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               32   1.4  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       31   2.4  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   31   2.4  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           31   2.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.2  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   7.2  
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   27   7.6  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.5  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   9.5  
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)                     29   9.5  

>SB_28961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 33.5 bits (73), Expect = 0.44
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -3

Query: 58 PAARGIH*XLERPPPR 11
          PAARGIH  LERPPPR
Sbjct: 14 PAARGIHYVLERPPPR 29


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 32.7 bits (71), Expect = 0.77
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGG------PXPGPXXPXPP 1374
            PP GG   P P P  G  P  GG      P PG   P PP
Sbjct: 946  PPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPP 985



 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPP 1374
            PP GG   P P P  G  P    P P P  P PP
Sbjct: 964  PPPGGGAPPLPPPPGGSAPP---PPPPPPPPPPP 994



 Score = 29.5 bits (63), Expect = 7.2
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPP 1374
            PP G  P P P P  G  P    P PG   P PP
Sbjct: 925  PPGGNAPLPPPPP-GGSAPSQPPP-PGGNAPPPP 956


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +3

Query: 1026 PQGXARGXTXXPPXSXAXSAXXTGXAXPXGPIPPGXPXGXKPIPFGXXKQKXVQNG 1193
            P G   G T  P      +   T    P   IPPG P    P P G         G
Sbjct: 547  PPGSPAGSTQGPTDGVVSAKPPTKKTTPQSMIPPGKPTDQTPKPPGSTSPNSATQG 602



 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +3

Query: 1026 PQGXARGXTXXPPXSXAXSAXXTGXAXPXGPIPPGXPXGXKPIPFG 1163
            P G   G T  P      +   T    P   IPPG P    P P G
Sbjct: 461  PPGSPAGSTQGPTDGVLSAKPPTKKTTPQSMIPPGKPTAPTPKPPG 506


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXPGXPQXXGA 1406
            PP GG PPP P P P  P   GA
Sbjct: 308  PPPGGAPPPPPPPPPPPPGDGGA 330



 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 1466 GGXPXPXPXPXAGXXPKXGGPXPGPXXPXPP 1374
            GG P P P P  G  P    P P    P PP
Sbjct: 287  GGAPVPPPPPADGSAPAPPPPPPPGGAPPPP 317


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 19/54 (35%), Positives = 20/54 (37%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXPGXPQXXGAXXXGLXFXXPPGFLRXPRXXXNPXQXPLPPG 1313
            PP G  PPP   P PG P        G      PG    P     P   P+PPG
Sbjct: 236  PPMGAPPPPHSMPPPGMPPPGMMPPPGFPPMGMPGMGGMPPPGMPP---PMPPG 286


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
 Frame = -2

Query: 1475 PPRGGXPXPXPX-----PXAGXXPKXGGPXPGPXXPXPP 1374
            PP GG P P P      P  G  P  GGP P      PP
Sbjct: 53   PPAGGYPPPQPGYAGGPPPPGIAPGIGGPPPSGQYGAPP 91


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPP 1374
            PP GG   P P P     P  GG  PGP  P PP
Sbjct: 655  PPPGGGMFPPPPP-----PPPGGGVPGPPKPPPP 683


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 1371 PG-GXXXXRPXXXAPXFWGXPGXGXGXGGGXPPXG 1472
            PG G     P   A   WG P  G G GGG PP G
Sbjct: 506  PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPG 540



 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 1371 PG-GXXXXRPXXXAPXFWGXPGXGXGXGGGXPPXG 1472
            PG G     P   A   WG P  G G GGG PP G
Sbjct: 539  PGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPG 573



 Score = 29.9 bits (64), Expect = 5.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 1419 WGXPGXGXGXGGGXPPXG 1472
            WG P  G G GGG PP G
Sbjct: 490  WGQPPPGAGQGGGPPPPG 507


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -2

Query: 1475 PPRGGXPXPXPXPXAGXXPKXGGPXPGPXXPXPPR 1371
            PPRG        P     P   GP  GP  P PPR
Sbjct: 78   PPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPGPPR 112


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXPGXP 1421
            PP GG PPP P P P  P
Sbjct: 190  PPSGGPPPPPPPPPPPPP 207


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 26.6 bits (56), Expect(2) = 7.6
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = +1

Query: 1126 PGXRPGENPSLSGXENKKXXKTGXLKKKXGXXXXXGVXRAVTGGERXXKLDPXRGXEAPP 1305
            PG RPG  P +      +  K   +    G      V R    G R   L P RG +  P
Sbjct: 550  PGKRPGPRPGIRPGRGGRIPKPAVVYPLNGITGARDVTRRPNNG-RPGVLRPDRGPDRKP 608



 Score = 21.0 bits (42), Expect(2) = 7.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1123 HPGXRPGENP 1152
            HPG RPG  P
Sbjct: 508  HPGRRPGWRP 517


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXPGXPQXXGAXXXGLXFXXPPGF-LRXP--RXXXNPXQXPLPPG 1313
            PP    PPP P P P  P         +     PG     P      NP Q P PPG
Sbjct: 689  PPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSAGNPQQQPPPPG 745


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -3

Query: 1474 PPXGGXPPPXPXPXP-GXPQXXGAXXXGLXFXXPPGFLRXPRXXXNPXQXPLPPG 1313
            PP GG  PP P P P G P        G     PP  L  P     P +   PPG
Sbjct: 356  PPVGGAAPPPPPPPPVGGPPPPPPPIEG----RPPSSLGNPPPPPPPGRGAPPPG 406


>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
          Length = 586

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 620 FRIILSCLLFLYYIGELNYVRTRIKLV-VWKIL*CEN 513
           F  IL C  FL++ G+  Y++ R KL+ +WK+  C N
Sbjct: 393 FGFILWCFFFLWH-GQALYLQPRKKLLRLWKLFICYN 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,156,050
Number of Sequences: 59808
Number of extensions: 606025
Number of successful extensions: 2811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2570
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4812488570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)