Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A11_e369_01.seq
         (1466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    77   8e-15
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    77   8e-15
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    46   2e-05
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   6.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   8.6  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 37/82 (45%), Positives = 47/82 (57%)
 Frame = +3

Query: 114 KTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXX 293
           +  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE            
Sbjct: 19  RLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKH 78

Query: 294 XXXIVGASLSDIMAKRNMKPEV 359
              IVGA+L  I  KRN +PEV
Sbjct: 79  QRGIVGANLDVIKEKRNQRPEV 100


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 76.6 bits (180), Expect = 8e-15
 Identities = 37/82 (45%), Positives = 47/82 (57%)
 Frame = +3

Query: 114 KTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXXX 293
           +  V+ D K F F+N K E+  L R+NPR+++WTVLYRR  KKG  EE            
Sbjct: 19  RLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKH 78

Query: 294 XXXIVGASLSDIMAKRNMKPEV 359
              IVGA+L  I  KRN +PEV
Sbjct: 79  QRGIVGANLDVIKEKRNQRPEV 100


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 242
           V+ D K F F  SKC     M+RNPRKV WT  YR+   K
Sbjct: 22  VRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGK 61


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 591 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALSN 755
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 756 SCA 764
           S A
Sbjct: 232 SDA 234


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = -2

Query: 361  LTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNLRL---YRTVHVTLRGF 191
            +T   +L+++    S AP I       L+V     SS   F N  +   Y    ++L+ F
Sbjct: 1001 MTEELLLQISSKLSSVAPKILNAVLYNLVVSDDQISSQEAFENFEVKMAYTVRQLSLKVF 1060

Query: 190  LLIKWAASHLEFKNVNVLPSTLTMVFXMARID 95
            LL   + S ++FK  NV   T    F + R+D
Sbjct: 1061 LLFLKSCSDVDFKPYNVFIYT---AFVVPRLD 1089


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,886,988
Number of Sequences: 5004
Number of extensions: 67454
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)