Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A11_e369_01.seq
         (1466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    57   3e-08
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    57   3e-08
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    56   9e-08
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    44   4e-04
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.015
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.0  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXX 299
           ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E               
Sbjct: 24  IRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSR 83

Query: 300 XIVGASLSDIMAKRNMKPEV 359
            IVGASL  I  KR  KPEV
Sbjct: 84  SIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 123  VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXX 299
            ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E               
Sbjct: 1034 IRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSR 1093

Query: 300  XIVGASLSDIMAKRNMKPEV 359
             IVGA+L  I  KR+ KPEV
Sbjct: 1094 SIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 55.6 bits (128), Expect = 9e-08
 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKG-QEEEXXXXXXXXXXXXXX 299
           ++ D + F F NSKC+     R  P K+TWT +YR++ KK    E               
Sbjct: 50  IRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSR 109

Query: 300 XIVGASLSDIMAKRNMKPEV 359
            IVGA+L  I  KR  KPEV
Sbjct: 110 SIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 227
           V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 22  VRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.015
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +3

Query: 144 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 227
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 615 ITIHWPSFYNVV-TGKTLALPNLIALQH 695
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,780,442
Number of Sequences: 37544
Number of extensions: 512064
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4675649524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)