Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A11_e369_01.seq
         (1466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    60   4e-09
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    30   3.6  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +3

Query: 114 KTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK---GQEEEXXXXXXXXX 284
           K +V+ DGK   FL+ K      +RRNPR + WTVLYR K KK   GQE+          
Sbjct: 19  KRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQEQVTRKKTKKSV 78

Query: 285 XXXXXXIVGASLSDIMAKRN 344
                 + G SL  I+AKRN
Sbjct: 79  QVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 230
           V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 22  VRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,228,237
Number of Sequences: 27780
Number of extensions: 412599
Number of successful extensions: 759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4204297912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)