Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A11_e369_01.seq
         (1466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    56   8e-08
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            55   1e-07
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           42   8e-04

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXX-XXX 299
           ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   +E               
Sbjct: 24  IRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSR 83

Query: 300 XIVGASLSDIMAKRNMKPEV 359
            IVGA+L  I  KR  KPEV
Sbjct: 84  SIVGATLEVIQKKRAEKPEV 103


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEXXXXXXXXXXX-XXX 299
           ++ D + F FLNSKC+     +  P K+ WT +YR++ KK   +E               
Sbjct: 24  IRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSR 83

Query: 300 XIVGASLSDIMAKRNMKPEV 359
            IVGA+L  I  KR  KPEV
Sbjct: 84  SIVGATLEVIQKKRAEKPEV 103


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 42.3 bits (95), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +3

Query: 123 VKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEE 257
           V+ D K F F  SKC     M+RNPRKV WT  +R    K   ++
Sbjct: 22  VRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKD 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,341,814
Number of Sequences: 28952
Number of extensions: 384538
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3893991168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)