Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A10_e361_02.seq
         (1500 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   4.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   5.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   5.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   5.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   5.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   5.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   5.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   5.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   5.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   5.8  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   7.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   7.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   7.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   7.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 598 AQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSIS 437
           +  S  P   +  G G  P +K  +  P P   P+ S P ++   +NP   S S
Sbjct: 48  SNKSPPPLADAAVGKGFHPWKKSPQGAPSPSSTPS-SLPTQRTSTSNPTYSSRS 100


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 114 ITILFTLILNLKHM*STFLSHLVIYSVFSGTGSVPLISAKLSSVMFSLISSAV 272
           +T+  T++L+L     T   +LV   + + + +VPLI    + +MF + SS V
Sbjct: 243 LTLGVTILLSL-----TVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVV 290


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 114 ITILFTLILNLKHM*STFLSHLVIYSVFSGTGSVPLISAKLSSVMFSLISSAV 272
           +T+  T++L+L     T   +LV   + + + +VPLI    + +MF + SS V
Sbjct: 243 LTLGVTILLSL-----TVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVV 290


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 685 GGQPAQNEPFQNFP 644
           GGQP Q  P+  FP
Sbjct: 71  GGQPPQGMPYPRFP 84


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 17  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 76

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 77  APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 113


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 26/103 (25%), Positives = 35/103 (33%)
 Frame = -3

Query: 697 ATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENK 518
           A   G QP   +  Q  P       L  PN     S+      ST   G A  +  + N 
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNG 120

Query: 517 PEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKP 389
             P   P  S P      N+   +S SG    +  + + P KP
Sbjct: 121 APPRSTPPLSTP-----SNSNATKS-SGLTSPLSVSTSPPGKP 157


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 114 ITILFTLILNLKHM*STFLSHLVIYSVFSGTGSVPLISAKLSSVMFSLISSAV 272
           +T+  T++L+L     T   +LV  ++   + ++PL+    + +MF + SS V
Sbjct: 243 LTLGVTILLSL-----TVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV 290


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 114 ITILFTLILNLKHM*STFLSHLVIYSVFSGTGSVPLISAKLSSVMFSLISSAV 272
           +T+  T++L+L     T   +LV  ++   + ++PL+    + +MF + SS V
Sbjct: 243 LTLGVTILLSL-----TVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV 290


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 114 ITILFTLILNLKHM*STFLSHLVIYSVFSGTGSVPLISAKLSSVMFSLISSAV 272
           +T+  T++L+L     T   +LV  ++   + ++PL+    + +MF + SS V
Sbjct: 243 LTLGVTILLSL-----TVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVV 290


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 1286 GXIXXPPXGGSGPXXSTSK 1230
            G    PP G SGP  + SK
Sbjct: 1108 GTAVPPPSGSSGPGSTGSK 1126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,666
Number of Sequences: 336
Number of extensions: 4728
Number of successful extensions: 27
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44964575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)