Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A10_e361_02.seq
(1500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 31 0.41
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 31 0.54
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.95
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 29 1.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 2.2
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 28 2.9
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 28 2.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 3.8
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 3.8
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 5.1
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 5.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 5.1
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 6.7
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 6.7
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 6.7
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 27 6.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 6.7
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 8.9
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 8.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 8.9
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 31.1 bits (67), Expect = 0.41
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 679 QPAQNEPF-QNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEI 503
+PA+ F + F+ NV L QP S P + +Q + + +EKPA ++ E +
Sbjct: 136 KPAEGNAFIVSTSFLSNVF-LEQPTSNAVVSEVNPQQQKSQDSSSFVTEKPASSEKEDKE 194
Query: 502 KP 497
KP
Sbjct: 195 KP 196
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 30.7 bits (66), Expect = 0.54
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -3
Query: 712 LNLNQATNQGGQPAQN-----EPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGA 548
L +N N+ G ++ F NF I V+++ PN PG ++ QK + ST A
Sbjct: 231 LGINLGKNKNGNEIEDYVEGVRTFGNFADIL-VINVSSPNTPGLRNLQKKSALSTLLT-A 288
Query: 547 APSEKPAENKPEPEI 503
SE+ N P P +
Sbjct: 289 VVSERNKLNSPHPPV 303
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.95
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 7/147 (4%)
Frame = -3
Query: 613 PNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEP-EIKPNQSGPIRQLLENNPVVQSIS 437
P + + +S +PTE S +P E E +P P E NQ R + + +
Sbjct: 479 PPKDSSSTSTQPTEQSNAQQAPSPKE---EERPLPSEPSQNQPAEYRDTPDTPRNIMPLP 535
Query: 436 GTVQ-----RIQSTINNPEKPRETVEKNETEQEKGGII-FVXXXXXXXXXXXXXXXXXXG 275
G + ++ N+ +K N E+ KG +I
Sbjct: 536 GLMSADQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQKV 595
Query: 274 LTADEIKENITEDSLAEIKGTEPVPEK 194
L+ I N +++LA + E VP+K
Sbjct: 596 LSPPPIITNFDKETLASNEAHEAVPQK 622
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 607 RPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIR 476
+ A SS KP + + ++P KPA+++P + KP + R
Sbjct: 169 KESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATETAR 212
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 628 VSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGP 482
VSL +P P A +S T + A P+E+ K +P+I + P
Sbjct: 406 VSLPEPVYPNAPTSAVSVHNPTISDEAEPTERAFLKKEKPQISKEKKNP 454
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 658 FQNFPFI-QNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPE 506
FQ P I Q++V + A++++KP+ TS + N P P++N PE
Sbjct: 244 FQKHPEIYQDMVG--ESEEEDAETNEKPSTTSDENN--QPQSPPSDNASNPE 291
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 448 QSISGTVQRIQSTINNPEKPRETVEK 371
+ +SG++QR+ S NP P V K
Sbjct: 83 RKVSGSIQRLASNFKNPSNPHADVSK 108
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 625 SLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPI 479
+ +QP + G + Q TQ GAAPS P +P ++P Q+G +
Sbjct: 175 NFMQPQKTGGFAPQATGFMQTQPFGAAPSFAP---QPTGFVQPQQTGVV 220
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = -3
Query: 589 SQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQST 410
S+ T TST + A+P+ P + PE +++ P + E+ Q+++ T
Sbjct: 73 SRPKTSTSTPKSAASPAPNPPASVPEKKVE----APSSTVAESTSTTQTVAAAAPSNPDT 128
Query: 409 INNPEKP 389
E P
Sbjct: 129 TATSEAP 135
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -3
Query: 604 PGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSISGTVQ 425
P + ++P + + +P ++ EN P+P +K I + E+ PVV ++
Sbjct: 895 PTVNTDRQPKTLTNSADELSPQKRRVEN-PKPVVKDEGPVSIVEDEESTPVVTKKEDSIP 953
Query: 424 RIQST 410
QST
Sbjct: 954 VAQST 958
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -3
Query: 574 ETSTQGNGAAPSEKP-AENKPEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNP 398
E +TQG+ ++P E++ +IK P+ QLL +N V ++ ++ + +T +NP
Sbjct: 430 EKNTQGHSLESKKEPNLESQSSNKIKTTIF-PVSQLLFSNANVPAMCQRLRSLNNTKSNP 488
Query: 397 EKPRETVEKNE 365
P ++++ E
Sbjct: 489 -LPAKSIDSLE 498
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.5 bits (58), Expect = 5.1
Identities = 27/105 (25%), Positives = 49/105 (46%)
Frame = -3
Query: 658 FQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPI 479
F +FP+++ V + + SSQ+ T S+Q + PS P ++ P +I P P
Sbjct: 392 FDSFPYVEPNVDRSKFPKSPLNSSQEVTIHSSQDRQSPPS-SPLKDVPS-QINP--FSPS 447
Query: 478 RQLLENNPVVQSISGTVQRIQSTINNPEKPRETVEKNETEQEKGG 344
+L +P+ T + I+ + P +P + E N+ + K G
Sbjct: 448 LRLKGGSPI------TKREIEFCRDLPNRPTSS-EPNQGDTRKAG 485
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/78 (20%), Positives = 29/78 (37%)
Frame = -3
Query: 712 LNLNQATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEK 533
++ N+ T++ +P NE P + +P + P P E
Sbjct: 80 ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEP 139
Query: 532 PAENKPEPEIKPNQSGPI 479
P N+P PE ++ P+
Sbjct: 140 PLPNEPVPETNCHKESPL 157
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 634 NVVSLIQPNRPGAQSSQKPTETSTQGNGAAPS--EKPAENKPEPEIKPNQ 491
N ++P R + +KP E+ST P+ ENK EP+ N+
Sbjct: 488 NKALFVKPERSSTVTIRKPIESSTNKISENPTTLSSKVENKNEPKTGENK 537
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 544 PSEKPAENKPEPEIKPNQSGPIRQLLEN 461
P+ K E +PE E++P Q G + L N
Sbjct: 49 PARKQIETRPEYEMEPEQPGQVYNLWYN 76
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 6.7
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Frame = -3
Query: 706 LNQATNQGGQPAQNEPFQ-NFPFIQNVVSLI----QPNRPGAQSSQKPTETSTQGNGAAP 542
+N +T G P E Q ++ ++ V++LI + P Q+ + + + AP
Sbjct: 217 INLSTTTDGLPVWMEESQVSYEDVKGVLTLIDSLYKKINPSKQALPIDQKNGSHASSVAP 276
Query: 541 SEKPAENKPEPEIKP---NQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKPRETVEK 371
+ + P N SG N S S +I ST P+K +T ++
Sbjct: 277 GTPSSLASVSTQATPQHQNSSGRTDSFHSLNTETPSKSTVDDQILSTAAQPKKSSDTDKE 336
Query: 370 NETE 359
ETE
Sbjct: 337 METE 340
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 559 GNGAAPSEKPAENKPEPEIKPNQSGPIRQLLEN-NPVVQSISGTVQRIQSTINNPEKPRE 383
G+G P+ EN P K Q +RQLLE P + S++ I N ++
Sbjct: 380 GSGE-PNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISLNA------DFIGNVDRAAP 432
Query: 382 TVEKNETEQEK 350
++ K E E+EK
Sbjct: 433 SLRKAEAEEEK 443
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 8.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 595 QSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQS---GPIRQLLENNPVVQSISGTVQ 425
+S QKP+ N AP+ P N PE N++ GP + + V +S S
Sbjct: 607 RSKQKPSSA----NSNAPTPAPTVNTTNPESSTNEATSVGPALEPSQGANVHKSDSELDN 662
Query: 424 RIQSTINNPE 395
+ QS +NP+
Sbjct: 663 QNQSGKSNPD 672
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 601 GAQSSQKPTETSTQGNGAAPSEKPAENKP 515
G Q P+ ST N +E+PA KP
Sbjct: 139 GVMDVQSPSTMSTSKNNVRNAERPASKKP 167
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 523 NKPEPEI-KPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPEKPRE 383
++P P+I K Q+ + L +NP + SG + +Q + NPE E
Sbjct: 1352 DRPSPDIFKDTQAIMNSRKLLSNPNSDAQSGLISSLQKKLYNPESNME 1399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,167,493
Number of Sequences: 5004
Number of extensions: 75829
Number of successful extensions: 264
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 838459602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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