Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A10_e361_02.seq
(1500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0172 - 14474674-14474761,14474842-14475012,14475090-144755... 38 0.027
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591... 36 0.083
02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753 33 0.77
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 31 1.8
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 31 3.1
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 31 3.1
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 4.1
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 30 5.4
02_01_0288 + 1932171-1932188,1932264-1933280 30 5.4
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 7.2
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 29 7.2
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700... 29 9.5
>11_04_0172 -
14474674-14474761,14474842-14475012,14475090-14475517,
14478824-14478961,14479048-14479482,14479559-14479783,
14479860-14480159
Length = 594
Score = 37.5 bits (83), Expect = 0.027
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -3
Query: 745 WQNFQAFLANPLNLNQATNQGGQPAQNEPFQNFPFIQNVVSLIQPNRPGAQS-SQKPTET 569
W+NF+ L LN PAQ EPF+ +PFI + P+R G + K E
Sbjct: 70 WKNFKTTLVTEYVLN--------PAQPEPFEKYPFITRPARNLHPHRLGTGGYAGKQAER 121
Query: 568 STQGNGAAPSEKP 530
+ AA S P
Sbjct: 122 DKEDEAAAESNTP 134
>03_02_0146 +
5916692-5917931,5918198-5918261,5918836-5919057,
5919626-5919747,5920105-5920170,5920192-5920386,
5920480-5921057,5921818-5921968,5922465-5922715
Length = 962
Score = 35.9 bits (79), Expect = 0.083
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -3
Query: 646 PFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQL- 470
P + S I PNRPG + TS + + I PN G ++++
Sbjct: 91 PPVSPAASRISPNRPGTAKNVHSVVTSCISPNLTGKAENGHSLATSGISPNCPGAVKKIH 150
Query: 469 -LENNPVVQSISGTVQRIQSTINNPEKP 389
L +P+ + G V++I S +P P
Sbjct: 151 SLATSPISPNWPGAVKKIHSLATSPISP 178
>02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753
Length = 280
Score = 32.7 bits (71), Expect = 0.77
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 601 GAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLE 464
G + KP+ +S+ GA P E AE++ ++K + +R L E
Sbjct: 208 GEEKGSKPSSSSSANGGAVPGEAEAEDERSTDMKSTVTAALRALRE 253
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -3
Query: 733 QAFLANPLNLNQATNQGGQPAQNEPFQNFPFIQNVVSL---IQPNRPGAQSSQKPTETST 563
+A+L P + + P+ + + P + V+ L I+ RP A S +P+ +
Sbjct: 152 RAYLEQPDFMQMLRDVQRNPSSLNMYLSDPRMMQVLGLMLNIKIQRPEASESSQPSSSPP 211
Query: 562 QGNGAAPSEKPAENKPEPEIKP 497
P K E +PEPE +P
Sbjct: 212 SQPQEQPEAKAREVEPEPEPEP 233
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 628 VSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKP 515
+SL P+ A SS+ P+ ST+ NG +P+ A+N P
Sbjct: 26 MSLSSPSTVDA-SSKSPSSPSTEENGTSPAHHQADNAP 62
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 613 PNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSG 485
P +S+ KP E S+ G KP+E + +P KP +G
Sbjct: 667 PEDGSNKSASKPKEASSGGKDLKGESKPSEGRAKPGRKPKVAG 709
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.3 bits (65), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -3
Query: 592 SSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLE 464
S + STQ N + +P +++P+P++ NQ+ + +LL+
Sbjct: 68 SGSRQFHGSTQLNSISFPRQPLKDQPQPQVMANQTQTVEELLQ 110
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 625 SLIQPNRPGA--QSSQKPTETSTQGNGAAPSEKPAENKP 515
S + P+ P SS+ P+ ST+ NG +P+ A+N P
Sbjct: 24 SPMSPSSPSTVDASSKSPSSPSTEENGTSPAHHQADNAP 62
>02_01_0288 + 1932171-1932188,1932264-1933280
Length = 344
Score = 29.9 bits (64), Expect = 5.4
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 607 RPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLL 467
RP ++ P A P E EPE +PN+S P R+ L
Sbjct: 194 RPRVGAAIAPFSLDVDEEVAEPEANVDEEVAEPEARPNESSPRREFL 240
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.5 bits (63), Expect = 7.2
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -3
Query: 592 SSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLEN-NPVVQSISGTVQRIQ 416
SSQ P+ QGN A PS ++ S + +LEN + + G + Q
Sbjct: 252 SSQTPSRNMLQGNNAQPSASDLS-----QLSSGVSHASKDVLENAEETIDELRGEAKMWQ 306
Query: 415 STINNPEKPRETVEKNETEQEK 350
++ ET++K T++ K
Sbjct: 307 RKTRKLKQGLETLKKVSTDKSK 328
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 29.5 bits (63), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 604 PGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQL 470
P + + +S+ GA+PS PA+NKP I P P+ +
Sbjct: 13 PASSDASTGNGSSSFKAGASPSSAPAQNKPPAPIGPVLGRPMEDV 57
>04_01_0542 -
7005972-7007443,7008568-7008766,7008780-7008855,
7009615-7009925
Length = 685
Score = 29.1 bits (62), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 741 CQPVGCDVVEDPPADGDAVVEPPWKIFGK 827
C V CD+ EDP G ++ P K+ G+
Sbjct: 184 CNAVICDICEDPEGGGFFMIPTPAKVSGR 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,519,718
Number of Sequences: 37544
Number of extensions: 520181
Number of successful extensions: 1441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4803272712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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