Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A10_e361_02.seq
         (1500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    33   0.64 
At1g26150.1 68414.m03192 protein kinase family protein similar t...    31   1.5  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    31   2.0  
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF...    31   2.0  
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF...    31   2.0  
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot...    31   2.6  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    31   2.6  
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa...    30   4.5  
At5g54095.1 68418.m06735 expressed protein                             29   6.0  
At4g14340.1 68417.m02208 casein kinase I (CKI1) identical to cas...    29   7.9  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   7.9  
At2g22720.3 68415.m02692 expressed protein                             29   7.9  
At2g22720.2 68415.m02691 expressed protein                             29   7.9  
At2g22720.1 68415.m02693 expressed protein                             29   7.9  

>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
 Frame = -3

Query: 610 NRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEP--EIK-PNQSGPIRQLLENNPVVQSI 440
           +RP   S  K       G+  +P   P    PEP  EI  PN   P +   E +P  Q  
Sbjct: 387 SRPVDCSKDKCAGGGGGGSNPSPKPTPTPKAPEPKKEINPPNLEEPSKPKPEESPKPQQP 446

Query: 439 SGTVQRIQSTINNPEKPRETVEKNE---TEQEK 350
           S   +      +NP++P+    K E   TEQ K
Sbjct: 447 SPKPETPSHEPSNPKEPKPESPKQESPKTEQPK 479


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 616 QPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGP 482
           QP+ PG  ++  PT   T GN    +  PA++ P PE  P  S P
Sbjct: 30  QPSFPG-DNATSPTREPTNGNPPETTNTPAQSSPPPE-TPLSSPP 72


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 685 GGQPAQNEPFQNFPFI-QNVVSLIQPN-RPGAQSSQKPTETSTQGNGAAPSEKPAENKPE 512
           G  P  N+  Q   F  ++  S   P+  P    S K T  S   N  +PS  P+  K  
Sbjct: 10  GRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPSPSPSPPKKT 69

Query: 511 PEIKPNQS 488
           P++ PN S
Sbjct: 70  PKLNPNPS 77


>At2g35230.2 68415.m04322 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 295

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -3

Query: 682 GQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEP 509
           G P    P   +P +   V   QP  P    SQ   + S  G GA PS+ P +  P P
Sbjct: 217 GYPNMFSPRSPYPLLSPGVQYPQPLTPNFSFSQIAQQGSL-GPGAGPSQGPPQPPPSP 273


>At2g35230.1 68415.m04321 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 402

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -3

Query: 682 GQPAQNEPFQNFPFIQNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEP 509
           G P    P   +P +   V   QP  P    SQ   + S  G GA PS+ P +  P P
Sbjct: 324 GYPNMFSPRSPYPLLSPGVQYPQPLTPNFSFSQIAQQGSL-GPGAGPSQGPPQPPPSP 380


>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 632

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 19/88 (21%), Positives = 42/88 (47%)
 Frame = -3

Query: 616 QPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSIS 437
           +PNR G + + +       G G+  S     ++ EP+ + N S  + + ++ +   +   
Sbjct: 178 EPNRIGGEDNDEKPAREDSGRGSCESVAKESDRAEPKREGNDSPELVESMDESKGEEDTK 237

Query: 436 GTVQRIQSTINNPEKPRETVEKNETEQE 353
            T    QS+ + P K  ETV++++ + +
Sbjct: 238 ETSDG-QSSASFPRK--ETVDQDQPDNK 262


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
 Frame = -3

Query: 637 QNVVSLIQPNRPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENN 458
           Q+ V+ ++P + G  + Q+     T G+ +   E+P E  P+   KP +   +R+L++  
Sbjct: 544 QSPVTAMKPPQEGLVNVQQ-----THGSASTEEEEPIEESPQGTEKP-EDLVMRELIQQQ 597

Query: 457 PVVQ---SISGTVQRIQSTIN-NPEKPRETVEKNETEQEK 350
             +Q   S+ G  ++I+ + N N  +  E  E +E E ++
Sbjct: 598 QQLQQQESMIGEYEKIEESHNYNNMEEEEDQEMDEEELDE 637


>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 480

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 595 QSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENN 458
           QS++KP  T  +    A   K  ++KPEPE+ P +   I+ L + N
Sbjct: 155 QSTRKPIITFQKRGRKASLPKKIDSKPEPELPPKEP-KIKNLFDLN 199


>At5g54095.1 68418.m06735 expressed protein
          Length = 135

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/70 (22%), Positives = 24/70 (34%)
 Frame = -3

Query: 607 RPGAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSISGTV 428
           +P    + KP E        A   KPAE +  PE+   +   +  + E  P  Q  +   
Sbjct: 62  KPAEAEAAKPAEAEVAKPAEAEVAKPAEAEAAPEVVKTEEAVVETVKETEPPKQEEAVVA 121

Query: 427 QRIQSTINNP 398
                T   P
Sbjct: 122 ANYTKTNEEP 131


>At4g14340.1 68417.m02208 casein kinase I (CKI1) identical to casein
           kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395
          Length = 457

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/88 (21%), Positives = 33/88 (37%)
 Frame = -3

Query: 601 GAQSSQKPTETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSISGTVQR 422
           G+ S  +PT          P+E+  +     +++   +G I      N   Q   G   R
Sbjct: 305 GSSSRPRPTPRPALDPPGPPAERAEKPTVGQDLRGRFTGAIEAFTRRNVSSQGALGDRSR 364

Query: 421 IQSTINNPEKPRETVEKNETEQEKGGII 338
            +S+ + P   +E  E       K G+I
Sbjct: 365 HRSSDDIPSSAKEVHESRNGSTSKRGVI 392


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = -3

Query: 574 ETSTQGNGAAPSEKPAENKPEPEIKPNQSGPIRQLLENNPVVQSISGTVQRIQSTINNPE 395
           E+S+  +G++  E+P   K EP +    S       E  PVV+    TV +     ++  
Sbjct: 209 ESSSSDDGSSSDEEPTPAKKEPIVVKKDSSDESSSDEETPVVKKKPTTVVKDAKAESSSS 268

Query: 394 KPRETVEKNETEQEKGGII 338
           +   + +   T  +K  ++
Sbjct: 269 EEESSSDDEPTPAKKPTVV 287


>At2g22720.3 68415.m02692 expressed protein
          Length = 569

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 616 QPNRPGAQSSQKPTETSTQGNGAAPSEKPAEN-KPEPEIKPNQSGPIR 476
           +P   G+Q  Q+P  + +Q   ++ S++PA +    P    N+  P+R
Sbjct: 293 RPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAPMR 340


>At2g22720.2 68415.m02691 expressed protein
          Length = 672

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 616 QPNRPGAQSSQKPTETSTQGNGAAPSEKPAEN-KPEPEIKPNQSGPIR 476
           +P   G+Q  Q+P  + +Q   ++ S++PA +    P    N+  P+R
Sbjct: 396 RPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAPMR 443


>At2g22720.1 68415.m02693 expressed protein
          Length = 340

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 616 QPNRPGAQSSQKPTETSTQGNGAAPSEKPAEN-KPEPEIKPNQSGPIR 476
           +P   G+Q  Q+P  + +Q   ++ S++PA +    P    N+  P+R
Sbjct: 64  RPASAGSQMQQRPASSGSQRPASSGSQRPASSGSQRPGSSTNRQAPMR 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,246,532
Number of Sequences: 28952
Number of extensions: 413299
Number of successful extensions: 1231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4000015680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)