Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A09_e353_01.seq
         (1506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   0.75 
02_05_0686 - 30900748-30902167,30903442-30904742                       29   7.2  
08_02_0764 - 20938110-20938371,20939783-20939933,20940521-20940596     29   9.6  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.9 bits (64), Expect(2) = 0.75
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -2

Query: 1457 PGXGPXPPPXXXXXLAGXXGS*PPKXXKXPGXEGP 1353
            PG GP PPP       G  G  PP     P   GP
Sbjct: 364  PGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGP 398



 Score = 21.4 bits (43), Expect(2) = 0.75
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -2

Query: 1472 PXXKNPGXGPXPPP 1431
            P     G GP PPP
Sbjct: 340  PSAAGAGSGPPPPP 353


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
 Frame = -3

Query: 1471 PPQK--TXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXGPPGXXKXP 1298
            PP K     P   PP       P   GP  P    GP    P   P   P  PPG  K  
Sbjct: 317  PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376

Query: 1297 XVXVGPPGSGXXXKXP 1250
                 PP  G   + P
Sbjct: 377  --PPPPPPKGGASRPP 390


>08_02_0764 - 20938110-20938371,20939783-20939933,20940521-20940596
          Length = 162

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 142 FRMIYNNDMYKTRSYVIYILGITPSSFTITNYLNL 246
           +R++ +ND Y  R YV+ +L       T+ N +N+
Sbjct: 85  YRVLLHNDNYNRREYVVQVLMKVIPGMTVDNAVNI 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,814,712
Number of Sequences: 37544
Number of extensions: 553272
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)