Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A09_e353_01.seq
         (1506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)                36   0.084
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    33   0.45 
SB_48920| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_19218| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_49577| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.7  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  

>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
          Length = 346

 Score = 35.9 bits (79), Expect = 0.084
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -3

Query: 1468 PQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXK-PXGPPGXXKXPXV 1292
            PQ T GP         +  PG  GP        PG   P   P  + P GPPG    P +
Sbjct: 52   PQGTKGPPGSQGLSGVQGYPGAPGPRGRSPPGPPGIPGPRGLPGYRGPKGPPGYQGMPGI 111

Query: 1291 XVGPPG 1274
              G PG
Sbjct: 112  -AGAPG 116


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 33.5 bits (73), Expect = 0.45
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 1471 PPQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXG-PGXKVPIXXPXXKPXGPPGXXKXPX 1295
            PP +   P   PP    +  PG  GP  P    G PG   P   P  +  GPPG    P 
Sbjct: 33   PPYEAPPPPPGPPGP--DGPPGFPGPQGPNGPKGPPGLPGPPGPPGFQ--GPPG---NPA 85

Query: 1294 VXVGPPG 1274
              +GPPG
Sbjct: 86   GAIGPPG 92


>SB_48920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 19/32 (59%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 105 LEVDGIDKLDI--EXPAXPGXXH*XLERPPPR 16
           LEVDGIDKLD        PG     LERPPPR
Sbjct: 23  LEVDGIDKLDAMPRKCPTPGDPL-VLERPPPR 53


>SB_19218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   KLXXXPRWRPL*XLVXXPRXCRXFDIKLIDTVDLE 105
           ++   P+  P   LV  P   + FDIKLIDTVDLE
Sbjct: 47  RIGAPPQVAPALELVDPP-GLQEFDIKLIDTVDLE 80


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 23/86 (26%), Positives = 24/86 (27%)
 Frame = -3

Query: 1498 PXRXGXXXXPPQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXGP 1319
            P R       P  +  P   PP       P   G N P     PG   P   P      P
Sbjct: 894  PRRNESPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAP 953

Query: 1318 PGXXKXPXVXVGPPGSGXXXKXPXXG 1241
            P     P     PPG G     P  G
Sbjct: 954  P-PPPPPGGSAPPPGGGAPPLPPPPG 978


>SB_49577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -1

Query: 105 LEVDGIDKLD----IEXPAXPGXXH*XLERPPPR 16
           LEVDGIDKLD     +    PG     LERPPPR
Sbjct: 23  LEVDGIDKLDSCHYSKLYVSPGDPL-VLERPPPR 55


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
 Frame = +1

Query: 85   IDTVDLEXXXXXXSKNSLYFRMIYNND---MYKTRSYVIYILGITPSSFTITNYLNL*R- 252
            +   D++      S   +Y  ++ +ND   ++K +SYV+ ++  +P++FT+       R 
Sbjct: 1245 VKATDVDPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRD 1304

Query: 253  ----GKVSYKLLS--IDGA 291
                G++SY ++S  +DGA
Sbjct: 1305 VGSNGRISYSIVSGNVDGA 1323


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 19/58 (32%), Positives = 20/58 (34%)
 Frame = -3

Query: 1411 PGXGGPNXPXXTXGPGXKVPIXXPXXKPXGPPGXXKXPXVXVGPPGSGXXXKXPXXGP 1238
            PG G         GPG       P   P GP    K P    G PG+G   K P   P
Sbjct: 762  PGNGRKGPGTSPDGPGNARK--GPGTSPDGPGTGRKGPGTSPGGPGTG--RKGPGTSP 815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,501,646
Number of Sequences: 59808
Number of extensions: 673116
Number of successful extensions: 1476
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)