Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A09_e353_01.seq
(1506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 36 0.057
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 36 0.057
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 36 0.057
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 33 0.53
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.70
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.70
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 3.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 3.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 3.7
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 6.5
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 6.5
AC024882-1|AAF60940.1| 369|Caenorhabditis elegans Hypothetical ... 29 6.5
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 8.6
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical protein
Y41E3.2 protein.
Length = 289
Score = 36.3 bits (80), Expect = 0.057
Identities = 28/78 (35%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = -3
Query: 1468 PQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXG-PGXKVPIXXPXXKPXGPPGXXKXPXV 1292
PQ GP P PG GP P G PG K PI P GPPG P
Sbjct: 139 PQGPPGPPGQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIG-----PPGPPGQAGAP-- 191
Query: 1291 XVGPPGSGXXXKXPXXGP 1238
G PGS + GP
Sbjct: 192 --GEPGSPAKSEPAVPGP 207
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 36.3 bits (80), Expect = 0.057
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 1411 PGXGGPNXPXXTXGPGXKVPIXXPXXK-PXGPPGXXKXPXVXVGPPG 1274
PG GP G G K P P + P GPPG P GPPG
Sbjct: 197 PGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPG 243
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter than
wild-typeprotein 7 protein.
Length = 318
Score = 36.3 bits (80), Expect = 0.057
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 1411 PGXGGPNXPXXTXGPGXKVPIXXPXXK-PXGPPGXXKXPXVXVGPPG 1274
PG GP G G K P P + P GPPG P GPPG
Sbjct: 197 PGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSNGLPSQNSGPPG 243
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 33.5 bits (73), Expect = 0.40
Identities = 24/79 (30%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Frame = -3
Query: 1471 PPQKTXGPVLXPPXXXXEXXPGX-GGPNXPXXTXGPGXKVPIXXPXXKPXGPPGXXKXPX 1295
PP P P + PG GGP GP P P P GPPG P
Sbjct: 159 PPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPG--PAGPPGNDGQPG 216
Query: 1294 VXVGPPGSGXXXKXPXXGP 1238
GP G GP
Sbjct: 217 QPGGPGQDGASSAGGEAGP 235
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical protein
F12F6.6 protein.
Length = 1126
Score = 33.1 bits (72), Expect = 0.53
Identities = 25/77 (32%), Positives = 26/77 (33%)
Frame = -3
Query: 1468 PQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXGPPGXXKXPXVX 1289
PQ P PP PG G P GPG +P P P GP G
Sbjct: 260 PQGPGMPRAFPPGASAPVAPGMPGA-FPPGQGGPG--MPGSFPPGAP-GPGGPGMPGSFA 315
Query: 1288 VGPPGSGXXXKXPXXGP 1238
G PG G P GP
Sbjct: 316 PGAPGPGGPGGYPSGGP 332
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical protein
H06A10.2 protein.
Length = 305
Score = 32.7 bits (71), Expect = 0.70
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 1411 PGXGGPNXPXXTXGPGXKVPIXXP-XXKPXGPPGXXKXPXVXVGPPGSGXXXKXPXXG 1241
PG GP P GP P P P GPPG P P +G K G
Sbjct: 225 PGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGGEG 282
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical protein
F54B11.2 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.70
Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -3
Query: 1411 PGXGGPNXPXXTXGPGXKVPIXXP-XXKPXGPPGXXKXPXVXVGPPGSGXXXKXPXXG 1241
PG GP P GP P P P GPPG P P +G K G
Sbjct: 224 PGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGGEG 281
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = -3
Query: 1435 PXXXXEXXPGXGGPNXPXXTXGPGXK--VP-IXXPX-XKPXGPPGXXKXPXVXVGPPGSG 1268
P + PG GP P GP P P P GPPG P P G G
Sbjct: 209 PGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPG 268
Query: 1267 XXXK 1256
K
Sbjct: 269 TAGK 272
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = -3
Query: 1435 PXXXXEXXPGXGGPNXPXXTXGPGXK--VP-IXXPX-XKPXGPPGXXKXPXVXVGPPGSG 1268
P + PG GP P GP P P P GPPG P P G G
Sbjct: 209 PGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPG 268
Query: 1267 XXXK 1256
K
Sbjct: 269 TAGK 272
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = -3
Query: 1435 PXXXXEXXPGXGGPNXPXXTXGPGXK--VP-IXXPX-XKPXGPPGXXKXPXVXVGPPGSG 1268
P + PG GP P GP P P P GPPG P P G G
Sbjct: 209 PGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPG 268
Query: 1267 XXXK 1256
K
Sbjct: 269 TAGK 272
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Frame = -3
Query: 1435 PXXXXEXXPGXGGPNXPXXTXGPGXK--VP-IXXPX-XKPXGPPGXXKXPXVXVGPPGSG 1268
P + PG GP P GP P P P GPPG P P G G
Sbjct: 209 PGASEQGGPGEPGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPG 268
Query: 1267 XXXK 1256
K
Sbjct: 269 TAGK 272
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein 14
protein.
Length = 345
Score = 29.5 bits (63), Expect = 6.5
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Frame = -3
Query: 1444 LXPPXXXXEXXPGXGGPNXPXXTXG----PGXKVPIXXPXXK-PXGPPGXXKXPXV--XV 1286
L PP E PG GGP G PG P + P GPPG P
Sbjct: 195 LFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRP 254
Query: 1285 GPPGSGXXXK 1256
GPPG K
Sbjct: 255 GPPGEPGTYK 264
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 29.5 bits (63), Expect = 6.5
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Frame = -3
Query: 1444 LXPPXXXXEXXPGXGGPNXPXXTXG----PGXKVPIXXPXXK-PXGPPGXXKXPXV--XV 1286
L PP E PG GGP G PG P + P GPPG P
Sbjct: 176 LFPPQCPCEAPPGDGGPPGQPGPDGPPGAPGNAGEDGKPGDQGPRGPPGIPGAPGQPGRP 235
Query: 1285 GPPGSGXXXK 1256
GPPG K
Sbjct: 236 GPPGEPGTYK 245
>AC024882-1|AAF60940.1| 369|Caenorhabditis elegans Hypothetical
protein Y9C9A.17 protein.
Length = 369
Score = 29.5 bits (63), Expect = 6.5
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = -3
Query: 454 VCINGFFVRSFTYF--KTYLFV--IFIRG*VLCYLFLRIQIYRLYLAQSM*CLV*MFI 293
+C++ FF+ S TY KTY + + +G L++Q+YR+ +AQS+ ++ +FI
Sbjct: 223 LCLHAFFLLSITYCGSKTYTKIKELISQGESEYSKKLQLQLYRVLVAQSILPMIFIFI 280
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.1 bits (62), Expect = 8.6
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Frame = -3
Query: 1438 PPXXXXEXXPGXGGPNXPXXTXG----PGXKVPIXXPXXK-PXGPPGXXKXPXV--XVGP 1280
PP PG GGP P G PG P + P GPPG P GP
Sbjct: 136 PPQCPCTAAPGLGGPPGPPGQDGIPGNPGRNGEDGAPGPQGPSGPPGPPGQPGQPGQRGP 195
Query: 1279 PG 1274
PG
Sbjct: 196 PG 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,977,660
Number of Sequences: 27780
Number of extensions: 569105
Number of successful extensions: 1104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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