Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A09_e353_01.seq
(1506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 33 0.37
At1g26150.1 68414.m03192 protein kinase family protein similar t... 32 0.85
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 1.5
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 31 1.5
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 29 6.0
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A... 29 8.0
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 33.5 bits (73), Expect = 0.37
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -3
Query: 1471 PPQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXG-PPGXXKXPX 1295
PP T P PP PG P+ P T PG P P G PP P
Sbjct: 458 PPSTTPSPG-SPPTSPTTPTPGGSPPSSP-TTPTPGGSPPSSPTTPTPGGSPPSSPTTPS 515
Query: 1294 VXVGPPGSGXXXKXPXXGP 1238
PP P P
Sbjct: 516 PGGSPPSPSISPSPPITVP 534
>At1g26150.1 68414.m03192 protein kinase family protein similar to Pto
kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 32.3 bits (70), Expect = 0.85
Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = -3
Query: 1498 PXRXGXXXXPPQKTXGPVLX--PPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPX 1325
P R PP+ T P PP P P P T P +P+ P
Sbjct: 41 PTREPTNGNPPETTNTPAQSSPPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSP 100
Query: 1324 GPPGXXKXPXVXVGPPGSGXXXKXPXXGP 1238
PP + P PP + P P
Sbjct: 101 PPPLPTEAP-----PPANPVSSPPPESSP 124
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 176
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/83 (27%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Frame = -3
Query: 1471 PPQKTXGPVLXPPXXXXEXXPGXGGPNX---PXXTXGPGXKVPIXXPXXKPXGP-PGXXK 1304
PP T PV PP P P P P +VP P KP P P
Sbjct: 82 PPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSS 141
Query: 1303 XPXV-XVGPPGSGXXXKXPXXGP 1238
P + PG P P
Sbjct: 142 SPPLPSSDAPGPSTDSISPAPSP 164
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical to
gi|10880495|gb|AAG24277
Length = 191
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/83 (27%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Frame = -3
Query: 1471 PPQKTXGPVLXPPXXXXEXXPGXGGPNX---PXXTXGPGXKVPIXXPXXKPXGP-PGXXK 1304
PP T PV PP P P P P +VP P KP P P
Sbjct: 82 PPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSS 141
Query: 1303 XPXV-XVGPPGSGXXXKXPXXGP 1238
P + PG P P
Sbjct: 142 SPPLPSSDAPGPSTDSISPAPSP 164
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = -3
Query: 1471 PPQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXGPPGXXKXPXV 1292
PP T P + PP P P P P ++P P PP K P
Sbjct: 124 PPTPTYSPPIYPPPIQKPPTPSYSPPVKP-----PPVQMPPTPTYSPPIKPPPVHKPPTP 178
Query: 1291 XVGPP 1277
PP
Sbjct: 179 TYSPP 183
Score = 29.1 bits (62), Expect = 8.0
Identities = 21/74 (28%), Positives = 23/74 (31%)
Frame = -3
Query: 1498 PXRXGXXXXPPQKTXGPVLXPPXXXXEXXPGXGGPNXPXXTXGPGXKVPIXXPXXKPXGP 1319
P + PP T P + PP P P P P PI P P P
Sbjct: 301 PVKSPPVQKPPTPTYSPPIKPPPVQKPPTPTYSPPIKPPPVKPP---TPIYSP---PVKP 354
Query: 1318 PGXXKXPXVXVGPP 1277
P K P PP
Sbjct: 355 PPVHKPPTPIYSPP 368
>At2g38720.1 68415.m04755 microtubule associated protein
(MAP65/ASE1) family protein low similarity to myosin
[Schistosoma japonicum] GI:3941320; contains Pfam
profile PF03999: Microtubule associated protein
(MAP65/ASE1 family)
Length = 587
Score = 29.1 bits (62), Expect = 8.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 774 KEFNXKYFYVFFSPKYLYVFS 712
K+FN K++ + FSPK L+ FS
Sbjct: 427 KQFNKKFWALLFSPKQLFKFS 447
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,702,950
Number of Sequences: 28952
Number of extensions: 470798
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4019292864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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