Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A08_e345_02.seq
         (1517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6G240 Cluster: Rhs element Vgr family protein; n=1; Pl...    40   0.13 
UniRef50_Q8NCB2-2 Cluster: Isoform 2 of Q8NCB2 ; n=5; Eutheria|R...    37   1.6  
UniRef50_Q8NCB2 Cluster: CaM kinase-like vesicle-associated prot...    37   1.6  

>UniRef50_A6G240 Cluster: Rhs element Vgr family protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Rhs element Vgr family
           protein - Plesiocystis pacifica SIR-1
          Length = 750

 Score = 40.3 bits (90), Expect = 0.13
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +1

Query: 472 RDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTVDLHHVPVKPTKTLGSNSAV 648
           R V +A ++ +T+  D  +T+   + VT+   RG+++G      V V  T+T+G+   V
Sbjct: 549 RSVQVANNQAITVGADASLTVGGSQSVTVAQDRGLSVGGSHTETVAVAATETVGAAKTV 607


>UniRef50_Q8NCB2-2 Cluster: Isoform 2 of Q8NCB2 ; n=5; Eutheria|Rep:
           Isoform 2 of Q8NCB2 - Homo sapiens (Human)
          Length = 473

 Score = 36.7 bits (81), Expect = 1.6
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVT 555
           ATD  VT ATD  +T ATD  VT ATDR  T
Sbjct: 369 ATDGSVTPATDGSITPATDGSVTPATDRSAT 399



 Score = 35.9 bits (79), Expect = 2.8
 Identities = 21/42 (50%), Positives = 22/42 (52%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGT 588
           ATD   T ATD  VT ATD  +T ATD  VT    R  T  T
Sbjct: 361 ATDGSATPATDGSVTPATDGSITPATDGSVTPATDRSATPAT 402



 Score = 34.3 bits (75), Expect = 8.5
 Identities = 18/31 (58%), Positives = 19/31 (61%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVT 555
           ATD  +T ATD  VT ATDR  T ATD   T
Sbjct: 377 ATDGSITPATDGSVTPATDRSATPATDGRAT 407


>UniRef50_Q8NCB2 Cluster: CaM kinase-like vesicle-associated
           protein; n=17; Amniota|Rep: CaM kinase-like
           vesicle-associated protein - Homo sapiens (Human)
          Length = 501

 Score = 36.7 bits (81), Expect = 1.6
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVT 555
           ATD  VT ATD  +T ATD  VT ATDR  T
Sbjct: 397 ATDGSVTPATDGSITPATDGSVTPATDRSAT 427



 Score = 35.9 bits (79), Expect = 2.8
 Identities = 21/42 (50%), Positives = 22/42 (52%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGT 588
           ATD   T ATD  VT ATD  +T ATD  VT    R  T  T
Sbjct: 389 ATDGSATPATDGSVTPATDGSITPATDGSVTPATDRSATPAT 430



 Score = 34.3 bits (75), Expect = 8.5
 Identities = 18/31 (58%), Positives = 19/31 (61%)
 Frame = +1

Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVT 555
           ATD  +T ATD  VT ATDR  T ATD   T
Sbjct: 405 ATDGSITPATDGSVTPATDRSATPATDGRAT 435


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,567,223
Number of Sequences: 1657284
Number of extensions: 10823901
Number of successful extensions: 27913
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27665
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 161715069475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)