Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A08_e345_02.seq
         (1517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    30   5.5  
01_02_0064 + 10763007-10763123,10763999-10764034                       29   7.3  
12_02_0939 + 24581356-24581628                                         29   9.7  
08_02_1611 - 28224239-28224511                                         29   9.7  
08_02_0943 + 22849939-22850211                                         29   9.7  
04_01_0495 - 6515982-6516254                                           29   9.7  

>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 306 SQVRSNGRRNVAYLCLFR-GLNSKRLLLLVDAH 211
           SQ + +G+ NVA+LCLF  G     + LL+D++
Sbjct: 713 SQAKEHGKNNVAFLCLFMLGKLEDCIQLLIDSN 745


>01_02_0064 + 10763007-10763123,10763999-10764034
          Length = 50

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 353 GRCWWWIGGSSTPASTLRSARTAAVTWP 270
           G  WWW G   +P+   R   +AAV  P
Sbjct: 7   GGRWWWCGSPPSPSQIRRRGGSAAVAQP 34


>12_02_0939 + 24581356-24581628
          Length = 90

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 RETDRDRPRYGGRSSGPESGSWRRG 326
           R  +R R R+GGR  G     WRRG
Sbjct: 29  RAAERSRRRWGGRRRGRRQRWWRRG 53


>08_02_1611 - 28224239-28224511
          Length = 90

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 RETDRDRPRYGGRSSGPESGSWRRG 326
           R  +R R R+GGR  G     WRRG
Sbjct: 29  RAAERSRRRWGGRRRGRRQRWWRRG 53


>08_02_0943 + 22849939-22850211
          Length = 90

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 RETDRDRPRYGGRSSGPESGSWRRG 326
           R  +R R R+GGR  G     WRRG
Sbjct: 29  RAAERSRRRWGGRRRGRRQRWWRRG 53


>04_01_0495 - 6515982-6516254
          Length = 90

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 252 RETDRDRPRYGGRSSGPESGSWRRG 326
           R  +R R R+GGR  G     WRRG
Sbjct: 29  RAAERSRRRWGGRRRGRRQRWWRRG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,186,981
Number of Sequences: 37544
Number of extensions: 303468
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)