Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A08_e345_02.seq
(1517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5145| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.021
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.45
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 30 4.2
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 29 7.4
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 9.8
>SB_5145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 37.9 bits (84), Expect = 0.021
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGT 588
A + VT T GVT T GVT T GVT GVT+ T
Sbjct: 66 AAEAGVTTTTQAGVTTTTQAGVTTTTQAGVTTTTQAGVTLST 107
Score = 36.3 bits (80), Expect = 0.064
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +1
Query: 478 VTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGT 588
VT+A + GVT T GVT T GVT GVT T
Sbjct: 63 VTVAAEAGVTTTTQAGVTTTTQAGVTTTTQAGVTTTT 99
Score = 34.7 bits (76), Expect = 0.20
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 466 TDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGT 588
T VT T GVT T GVT T GVT+ VT+ T
Sbjct: 75 TQAGVTTTTQAGVTTTTQAGVTTTTQAGVTLSTQPEVTVAT 115
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 466 TDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRG 573
T VT T GVT T GVT++T VT+ G
Sbjct: 83 TQAGVTTTTQAGVTTTTQAGVTLSTQPEVTVATKAG 118
>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 33.5 bits (73), Expect = 0.45
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV 591
A R + +A RG+ +A RG+ AT RG+ + +RG+ + +
Sbjct: 151 AAIRGMVLAAIRGMVLAAIRGMVSATIRGMVLAAIRGMVLAAI 193
Score = 33.5 bits (73), Expect = 0.45
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV 591
A R + +A RG+ AT RG+ +A RG+ + +RG+ + +
Sbjct: 159 AAIRGMVLAAIRGMVSATIRGMVLAAIRGMVLAAIRGMVLAAI 201
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGV 576
A R + AT RG+ +A RG+ +A RG+ + +RG+
Sbjct: 167 AAIRGMVSATIRGMVLAAIRGMVLAAIRGMVLAAIRGM 204
Score = 30.7 bits (66), Expect = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 484 IATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV 591
+A RG+ +A RG+ +A RG+ + +RG+ + +
Sbjct: 66 LAAIRGMVLAVIRGMVLAVIRGMVLAAIRGMVLAAI 101
Score = 30.7 bits (66), Expect = 3.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV 591
A R + +A RG+ +A RG+ +A RG+ + +R + + +
Sbjct: 67 AAIRGMVLAVIRGMVLAVIRGMVLAAIRGMVLAAIRSMVLAAI 109
Score = 29.1 bits (62), Expect = 9.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 484 IATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV 591
+A RG+ +A RG+ +A RG+ +RG+ + +
Sbjct: 150 LAAIRGMVLAAIRGMVLAAIRGMVSATIRGMVLAAI 185
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 30.3 bits (65), Expect = 4.2
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTVDLHHVPVKPTKTLGSNS 642
AT V++AT V++AT V++AT V++ V++ T V ++ + +
Sbjct: 249 ATYSLVSVATYNWVSVATYSWVSVATYNWVSVATYSWVSVATYSWVSVATYSWVSVATYN 308
Query: 643 AVKYSPNNYTNFDTPNCLT 699
V + +N+ + T +C++
Sbjct: 309 WVSVATDNWVSVATYSCIS 327
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTVDLHHVPVKPTKTLGSNS 642
AT V++AT V++AT V++AT V++ V++ T L V ++ + S
Sbjct: 209 ATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYSWVSVATYSLVSVATYNWVSVATYS 268
Query: 643 AVKYSPNNYTNFDT 684
V + N+ + T
Sbjct: 269 WVSVATYNWVSVAT 282
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 29.5 bits (63), Expect = 7.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 463 ATDRDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGV 576
A +RD+T+ D +T+ +RGV ++ + + + R V
Sbjct: 229 ALERDITLLADGDMTLVGERGVALSGGQKARVTLARAV 266
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.1 bits (62), Expect = 9.8
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 472 RDVTIATDRGVTIATDRGVTIATDRGVTIVMVRGVTIGTV-DL-HHVPVKPTKTLGSNSA 645
+ VT +GVT RGV +GVT +++GVT + D+ HHV + T+ ++
Sbjct: 485 KGVTHYAMKGVTCHVIRGVKHHVMKGVTYHVMKGVTYHVMRDVTHHVKGRSTQEFSRDNR 544
Query: 646 VKYSPNNYTNFDTP 687
++ + D P
Sbjct: 545 LRQRSLRARSVDRP 558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,492,736
Number of Sequences: 59808
Number of extensions: 349356
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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