Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A08_e345_02.seq
         (1517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   4.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   6.9  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 574 VTIGTVDLHHVPVKPTKTLGSNSAVKYSPNNYTNFDTPN 690
           +T GTV L H  +          A KY P  +T   TP+
Sbjct: 413 LTAGTVVLLHTWIAGLNEENFKDAKKYLPERWTTPTTPH 451


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 622 KTLGSNSAVKYSPNNYTNFDTPN 690
           KT+ +N+  KY+ NN  N++  N
Sbjct: 88  KTIHNNNNYKYNYNNKYNYNNNN 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 349  AAGGGSEGPRRQLPLSGPLERPP 281
            + G  S G  R +P+SG  E PP
Sbjct: 1839 SVGRRSVGSARNIPVSGSPEPPP 1861


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,212
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53113500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)