Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A08_e345_02.seq
         (1517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot...    31   2.6  
At5g11370.1 68418.m01327 hypothetical protein various predicted ...    30   4.6  

>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 461

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +1

Query: 214 SVHQEKKAL-GVQTAKQTEIGHVTAAVRADLRV 309
           SVH+    + G++++K TE+GHV + VR ++ V
Sbjct: 396 SVHESNTLVTGLESSKVTELGHVASTVRQEVNV 428


>At5g11370.1 68418.m01327 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 311

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 741 NIKNGAKLSGISCLCQAVWGVKVSVIIWRIFNGAVAAKRLRRLH 610
           ++ +G+++SG   +CQ VW +K+   I+      V    L+ LH
Sbjct: 48  HLVHGSRISGFGLVCQVVWSLKLKDEIFVDVPRMVCLPSLKTLH 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,555,410
Number of Sequences: 28952
Number of extensions: 241065
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4057847232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)