Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A07_e337_01.seq
         (1541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    29   7.4  
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    29   7.4  

>12_01_0672 +
           5731288-5731356,5732032-5732117,5732634-5732724,
           5732886-5732935,5733339-5733408,5733508-5733617,
           5733943-5734463,5734856-5734949,5735095-5735225,
           5735241-5736274,5736383-5736457,5736615-5737104,
           5737375-5738009,5738166-5738378
          Length = 1222

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 552 CMKYFCITYLFDNLSKIV--LP*CHQEMNHIICKP 454
           C  +FC T + DN S I    P C  E  HI C P
Sbjct: 49  CQHWFCYTCI-DNWSAITNRCPLCKSEFQHITCTP 82


>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 108 DLPGEHCTNSLVPNXLQPGGXPLVXRAAATA 16
           DL  +H  ++L+P  ++ GG PLV R  + A
Sbjct: 44  DLVAQHVVDALLPVSMETGGGPLVVRKVSYA 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,023,225
Number of Sequences: 37544
Number of extensions: 518522
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4965702224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)