Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A07_e337_01.seq
         (1541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17859| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.46 
SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.7  
SB_8543| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.5  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             29   7.5  
SB_37030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  
SB_15671| Best HMM Match : DUF765 (HMM E-Value=9.6)                    29   9.9  

>SB_17859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 33.5 bits (73), Expect = 0.46
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -1

Query: 113 ISTXQANTVLIPSCRIX---CSPGXXH*XLERPPPRGSXS 3
           I+T + NT+ IPS ++    CSPG     LERPPPR S +
Sbjct: 22  IATHKLNTLFIPSTQMASNSCSPGDPL-VLERPPPRWSSN 60


>SB_45427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 119 G*ISTXQANTVLIPSCRIXCSPGXXH*XLERPPPRGSXS 3
           G ++T  A  V  P     CSPG     LERPPPR S +
Sbjct: 10  GHLTTNAATRVRFPLISNSCSPGDPL-VLERPPPRWSSN 47


>SB_8543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 98  ANTVLIPSCRIXCSPGXXH*XLERPPPRGSXS 3
           AN +LI      CSPG     LERPPPR S +
Sbjct: 11  ANIILIKITSNSCSPGDPL-VLERPPPRWSSN 41


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -1

Query: 1064 PPLGGW-XYQXFPXFFXXXXXGHAXK 990
            PPLGGW  Y+  P F+      HA K
Sbjct: 226  PPLGGWGRYEYIPTFYACTLDWHANK 251


>SB_37030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 107 TXQANTVLIPSCRIXCSPGXXH*XLERPPPRGSXS 3
           T    +V+I S    CSPG     LERPPPR S +
Sbjct: 24  TFTLGSVIIASLSNSCSPGDPL-VLERPPPRWSSN 57


>SB_15671| Best HMM Match : DUF765 (HMM E-Value=9.6)
          Length = 139

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 107 TXQANTVLIPSCRIXCSPGXXH*XLERPPPRGSXS 3
           T  A T L+ +    CSPG     LERPPPR S +
Sbjct: 4   TYTAGTNLVTASSNSCSPGDPL-VLERPPPRWSSN 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,774,765
Number of Sequences: 59808
Number of extensions: 561693
Number of successful extensions: 2235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2235
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5023768556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)