Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A07_e337_01.seq
         (1541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06560.1 68416.m00762 poly (A) polymerase family protein simi...    25   9.1  

>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
           to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
           gamma) (Polynucleotide adenylyltransferase gamma) (SRP
           RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
           profiles PF04926: Poly(A) polymerase predicted RNA
           binding domain, PF04928: Poly(A) polymerase central
           domain
          Length = 483

 Score = 25.4 bits (53), Expect(2) = 9.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 346 YCLSFMGYSTH*EKLKQFLFSENISLEWVKLRF 444
           YC S +  ST  + + +FL   N++ +++KL F
Sbjct: 269 YCNSTITRSTFYKIVAEFLLGHNLTKDYLKLNF 301



 Score = 21.8 bits (44), Expect(2) = 9.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 WVKLRFQCLRLTNDVIH 477
           WVK RF+CL +  + ++
Sbjct: 338 WVKSRFRCLLIKIEEVY 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,263,099
Number of Sequences: 28952
Number of extensions: 422411
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4134955968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)