Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A06_e329_02.seq
         (1516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   2.9  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    28   2.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   5.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   5.1  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   6.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +2

Query: 530  KLKKN--EHMCLLMILYMPSPSISNLSANQ*LQFRLED---LPERTDP---LNPCYT 676
            +++KN    MCLL I Y   P IS+  + +    RLED   + E+T     +NP +T
Sbjct: 1429 RIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFT 1485


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 829 PPSYANEGPYSYDISKPNYTKVPSISQSAKPDS 927
           P  YA+E P SYDI +  Y ++  +S+    D+
Sbjct: 11  PRGYASEFPKSYDIDEIEYERINQLSKLKLEDA 43


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 265 LVCLEEVSNHRPKTIQLIQPL 203
           L  L  +S+H PKT+QL++PL
Sbjct: 403 LKSLLSISSHLPKTLQLMEPL 423


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 736 GFSDKYGV-SNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISKPNYTKVPSISQS 912
           G+S  + V ++SNY  + + G  GG  +    P +Y N  P S      +    P+I+ S
Sbjct: 218 GYSRNFPVHASSNYNTTHTSG--GGVHSGAATPNAYVNNNPSSSRRESESPANSPNITSS 275

Query: 913 A 915
           A
Sbjct: 276 A 276


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 732 SSISAITYSFWRNFLWS 682
           +S+ AI YS+ RNF+WS
Sbjct: 223 TSLPAIIYSWGRNFMWS 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,656,987
Number of Sequences: 5004
Number of extensions: 83625
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 848370472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)