Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A06_e329_02.seq
         (1516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    32   1.0  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   3.2  
07_03_0993 - 23182070-23182615                                         30   4.2  
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325...    30   5.5  

>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
 Frame = +1

Query: 589 DIKPIGKPVASIPIRGPPRA--YGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVS 762
           D +P G P A      PP    Y  P P  Y            GYGGN R G    YG  
Sbjct: 292 DFRP-GGPSAPGTYGQPPAPGNYAQPHPPTYPGSNQGAPGVNPGYGGNNRQGPGPAYGGD 350

Query: 763 N----SNYQFSQSGG 795
           N    SN   SQS G
Sbjct: 351 NWQGGSNQYPSQSEG 365


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 22/75 (29%), Positives = 28/75 (37%)
 Frame = +1

Query: 607 KPVASIPIRGPPRAYGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVSNSNYQFSQ 786
           +P    P  GPP +YG      Y            GY G+  P      G+ +S   F+ 
Sbjct: 430 EPPVGRPNSGPPPSYGAGG---YGPQGGSGFSESYGYSGS--PSHRGNAGMKSSPSPFAP 484

Query: 787 SGGIYGGEVNYXTKP 831
           SG   GG  NY   P
Sbjct: 485 SGPSSGGSGNYGRLP 499


>07_03_0993 - 23182070-23182615
          Length = 181

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 343 DDIVDELVSRKQGRSLGGFDNFDEVYSDPTIKEALDGGDDPEARNLIIGRLCTLGL 510
           DD VD+ V+     S G  DN +EV     +++   GG D   +  ++G LC++GL
Sbjct: 65  DDEVDDAVANASEGS-GDADNDEEVEM-VLVEDEQGGGGDHRWQQHVVGVLCSVGL 118


>09_06_0172 +
           21329904-21331512,21331595-21331740,21332333-21332556,
           21333689-21334448
          Length = 912

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
 Frame = +1

Query: 574 YAQPVDIKPIGKPVASIPIRGPPRAYG----PPKPMLYXXXXXXXXXXXXGYGGNGRPGF 741
           + +P  ++    PVA  P  GPP  YG    PP P               GYG    P +
Sbjct: 146 HRRPEIVRSAAPPVAPPPQMGPPPPYGSGYAPPPP----------YGSGYGYGYGPAPDY 195

Query: 742 SDKYGVSNSNYQ--FSQSGGIYGG 807
                V+N  Y   +   GG  GG
Sbjct: 196 GGGMAVANGGYDPGYGGMGGASGG 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,980,078
Number of Sequences: 37544
Number of extensions: 643949
Number of successful extensions: 1448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)