Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A06_e329_02.seq
         (1516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10)                    35   0.15 
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.6  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.6  
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  

>SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10)
          Length = 131

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 854 HTVTIFLNQTTPKYHLFLSQLNPTXLXTARPSSFLYIAMGIXT 982
           H   +F+N T PK  +FL+ L P  +   +P    YI +G+ T
Sbjct: 79  HRRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTT 121


>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 820

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +1

Query: 373 KQGRSLGGFDNFDEVYSDPTIKEALDGGDDPEARNLIIGRLCTLGLIQCDDEETQEKRTY 552
           K    + GF N DE  +   + E  D GD     +     L T      D+E  +  R+ 
Sbjct: 705 KDACGIPGFTNSDEAQAGERVLECFDQGDSDGIASCAAQPLFTY----LDNEIAKLSRSL 760

Query: 553 VSPDDLIYAQPVDIKPI-GKPVASIPIR 633
            +P D+I  +PV I  +  KP    P++
Sbjct: 761 RAPGDIITTKPVTINTVFEKPRPPDPVQ 788


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
 Frame = +1

Query: 625 PIRGPPRAYGPPKPMLYXXXXXXXXXXXXGYGGNGRPGFSDKYGVSNSNY---QFSQSGG 795
           P R   R YGP                  GYG +   G SD+YG S+  Y   + S SGG
Sbjct: 199 PARSADRGYGP-----LPDRSGDRYSADRGYGADRGYGSSDRYGGSSERYLPPERSYSGG 253

Query: 796 IYG-GEVNYXTKPPSYANEGPY-SYDISKPNYTKVPSISQSA 915
             G    +Y      Y+++  Y S    + +Y   P  S +A
Sbjct: 254 DRGYDRGSYGGAERDYSSDRGYSSAPYERSSYGPPPQRSPAA 295


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 823 TKPPSYANEGPYSYDISKPNYTKV--PSISQSAKP 921
           +KP  Y    PY YD+ KP+  ++  PSI + +KP
Sbjct: 476 SKPSIYEISKPYIYDVGKPSIYELSKPSIYELSKP 510


>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 523 DEETQEKRTYVSPDDLI-YAQPVDIKPIGKPVASIPIRGPPRAYGPP 660
           D +T      VS D+++   + V  +P+  P+ ++PI+ P   Y PP
Sbjct: 13  DGDTATGELIVSVDEVLTVTRTVISEPVAPPMPTVPIQTPSAPYQPP 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,268,193
Number of Sequences: 59808
Number of extensions: 660358
Number of successful extensions: 1341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)