Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030723E4_A06_e329_02.seq
(1516 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08223-1|CAA69400.1| 501|Homo sapiens Mesenchyme Fork Head-1 pr... 38 0.13
BC113439-1|AAI13440.1| 501|Homo sapiens forkhead box C2 (MFH-1,... 38 0.13
BC113437-1|AAI13438.1| 501|Homo sapiens forkhead box C2 (MFH-1,... 38 0.13
BC113470-1|AAI13471.1| 378|Homo sapiens LOC653115 protein protein. 32 4.8
BC112027-1|AAI12028.1| 378|Homo sapiens heterogeneous nuclear r... 32 4.8
BC080591-1|AAH80591.1| 189|Homo sapiens HNRPA3 protein protein. 32 4.8
AY363225-1|AAQ63629.1| 378|Homo sapiens heterogeneous nuclear r... 32 4.8
AC079305-1|AAY14709.1| 378|Homo sapiens unknown protein. 32 4.8
AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA seq... 32 6.3
>Y08223-1|CAA69400.1| 501|Homo sapiens Mesenchyme Fork Head-1
protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 742 SDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISK 876
S + G+ NS SQ G ++ Y + PP Y + PYSYD +K
Sbjct: 456 SHRLGIENSTLGESQVSGNASCQLPYRSTPPLYRHAAPYSYDCTK 500
>BC113439-1|AAI13440.1| 501|Homo sapiens forkhead box C2 (MFH-1,
mesenchyme forkhead 1) protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 742 SDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISK 876
S + G+ NS SQ G ++ Y + PP Y + PYSYD +K
Sbjct: 456 SHRLGIENSTLGESQVSGNASCQLPYRSTPPLYRHAAPYSYDCTK 500
>BC113437-1|AAI13438.1| 501|Homo sapiens forkhead box C2 (MFH-1,
mesenchyme forkhead 1) protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.13
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 742 SDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISK 876
S + G+ NS SQ G ++ Y + PP Y + PYSYD +K
Sbjct: 456 SHRLGIENSTLGESQVSGNASCQLPYRSTPPLYRHAAPYSYDCTK 500
>BC113470-1|AAI13471.1| 378|Homo sapiens LOC653115 protein protein.
Length = 378
Score = 32.3 bits (70), Expect = 4.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNYQ-FSQSGGIYGGEVNYXTK------PPSYANEG 852
GYGG G G YG + Y F GG YGG Y ++ P Y N+G
Sbjct: 248 GYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
>BC112027-1|AAI12028.1| 378|Homo sapiens heterogeneous nuclear
ribonucleoprotein A3 protein.
Length = 378
Score = 32.3 bits (70), Expect = 4.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNYQ-FSQSGGIYGGEVNYXTK------PPSYANEG 852
GYGG G G YG + Y F GG YGG Y ++ P Y N+G
Sbjct: 248 GYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
>BC080591-1|AAH80591.1| 189|Homo sapiens HNRPA3 protein protein.
Length = 189
Score = 32.3 bits (70), Expect = 4.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNYQ-FSQSGGIYGGEVNYXTK------PPSYANEG 852
GYGG G G YG + Y F GG YGG Y ++ P Y N+G
Sbjct: 59 GYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 111
>AY363225-1|AAQ63629.1| 378|Homo sapiens heterogeneous nuclear
ribonucleoprotein A3 protein.
Length = 378
Score = 32.3 bits (70), Expect = 4.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNYQ-FSQSGGIYGGEVNYXTK------PPSYANEG 852
GYGG G G YG + Y F GG YGG Y ++ P Y N+G
Sbjct: 248 GYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
>AC079305-1|AAY14709.1| 378|Homo sapiens unknown protein.
Length = 378
Score = 32.3 bits (70), Expect = 4.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNYQ-FSQSGGIYGGEVNYXTK------PPSYANEG 852
GYGG G G YG + Y F GG YGG Y ++ P Y N+G
Sbjct: 248 GYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQG 300
>AL354775-1|CAI12730.1| 276|Homo sapiens protein ( Human DNA
sequence from clone RP11-223F20 on chromosome 13
Contains a novel heterogeneous nuclear ribonucleoprotein
family A protein and).
Length = 276
Score = 31.9 bits (69), Expect = 6.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 712 GYGGNGRPGFSDKYGVSNSNY-QFSQSGGIYGGEVNYXTK 828
GYGG G G YG + Y +F + GG YGG Y ++
Sbjct: 145 GYGGGGG-GSRGSYGRGDGGYNRFGRDGGNYGGGPGYSSR 183
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,449,688
Number of Sequences: 237096
Number of extensions: 3499185
Number of successful extensions: 6844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6838
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22526554074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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