Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A06_e329_02.seq
         (1516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical p...    31   2.1  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    31   2.1  
Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical pr...    31   2.8  
Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    30   4.9  
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    30   4.9  

>U55364-11|AAA97976.1|  196|Caenorhabditis elegans Hypothetical
           protein F21C10.4 protein.
          Length = 196

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 718 GGNGRPGFS-DKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYAN 846
           GG GR G      G  +S+  FS+SGG  GG+ +  +   SY N
Sbjct: 24  GGGGRGGGGRGSSGARSSSRSFSRSGGAGGGKFHSSSSRSSYLN 67


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +1

Query: 448 DGGDDPEARNLIIGRLCT-LGLI--QCDDEETQEKRTYVSPDDLIYAQPVDIKPIGKPVA 618
           +GG   EAR   + ++   L LI  Q D E   +K     P+D I        P   P+ 
Sbjct: 18  NGGSSNEARAFFLSQIIDQLKLISSQTDAERQLQKLQLKDPNDNIVKATPPPPPPPPPLI 77

Query: 619 SIPIRGPPRAYGPPKPML 672
           SI  + PP    PP P L
Sbjct: 78  SILQQAPPPPPPPPPPTL 95


>Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical
           protein F33H2.2 protein.
          Length = 816

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 523 DEETQEKRTYVSPDDLIYAQPVDIKPIGKPVASIPIRGPPRA 648
           DE+++++    S   L+   P+ I+    PV S+P+ GPP A
Sbjct: 496 DEKSRQRVLQKSYGILVAMAPLSIEACAIPVQSVPLIGPPNA 537


>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 712 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISKPN 882
           G GG GR GF      S  +++  Q G + GG+     +P SY      S++ S+P+
Sbjct: 76  GRGGGGR-GFGGNREFSAGDFE-KQYGRVGGGDDTNSGQPDSYGQADSASFNDSRPD 130


>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 721 GNGRPGFSDKYGVSNSNYQFSQSGG 795
           GN RP  S   GVS S+Y+  +SGG
Sbjct: 574 GNKRPSISSSKGVSLSDYRMRRSGG 598


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 721 GNGRPGFSDKYGVSNSNYQFSQSGG 795
           GN RP  S   GVS S+Y+  +SGG
Sbjct: 574 GNKRPSISSSKGVSLSDYRMRRSGG 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,879,601
Number of Sequences: 27780
Number of extensions: 523852
Number of successful extensions: 1280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)