Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030723E4_A06_e329_02.seq
         (1516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    33   0.49 
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418    31   2.0  
At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase fam...    31   2.0  
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    31   2.6  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    31   2.6  
At5g26080.1 68418.m03103 proline-rich family protein contains pr...    30   3.5  
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    30   3.5  
At3g14640.1 68416.m01853 cytochrome P450, putative similar to GB...    29   8.0  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   8.0  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    29   8.0  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 739  FSDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYSYDISKPNYTKVPSISQSAK 918
            +S     S SN + S +        NY    PSY+   P SY  S P Y+     S  A 
Sbjct: 1734 YSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP-SYSPSSPTYSPSSPYSSGAS 1792

Query: 919  PD 924
            PD
Sbjct: 1793 PD 1794


>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
          Length = 896

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = +1

Query: 358 ELVSRKQGRSLGGFDNFDEVYSDPTIKEALDGGDDPEARNLIIG-------RLCTLGLIQ 516
           E +  K    +G F  F+ +Y      +  D  +DPE    +IG       R C  G   
Sbjct: 221 ETLQGKNREEVGEFTKFERIYDYDVYNDVGDPDNDPELARPVIGGLTHPYPRRCKTGRKP 280

Query: 517 CDDEETQEKR 546
           C+ + + E+R
Sbjct: 281 CETDPSSEQR 290


>At3g23820.1 68416.m02994 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam
           profile: PF01370 NAD dependent epimerase/dehydratase
           family
          Length = 460

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 361 LVSRKQGRSLGGFDNFDEVYSDPTIKEA 444
           L  RK+G  + GFDNF++ Y DP++K A
Sbjct: 129 LALRKRGDGVLGFDNFNDYY-DPSLKRA 155


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 712 GYGGNGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYA 843
           GYGG G PG+   Y        +  +GG YG   +  ++   YA
Sbjct: 314 GYGGYGGPGYGGAYESGGPGGSYEGAGGPYGRGYSSSSRYHPYA 357


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 547 TYVSPDDLIYAQPVDIKPIGKPVASIPIRGPPRAYGPPKP 666
           +Y +P   IY+ P+   PI KP    P   PP    PP P
Sbjct: 54  SYTTPPPPIYSPPIYPPPIQKPPTYSPPIYPPPIQKPPTP 93


>At5g26080.1 68418.m03103 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 141

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 526 EETQEKRTYVSPDDLIYAQPVDIKPIGKPVASIPIR--GPPRAYGPPKPMLY 675
           + T   +   SP    Y  PV I P   PV S P+    PP  Y PP P +Y
Sbjct: 31  QTTTNYQPIYSPPPPPYRSPVTIPP-PPPVYSRPVAFPPPPPIYSPPPPPIY 81


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 712 GYGG--NGRPGFSDKYGVSNSNYQFSQSGGIYGGEVNYXTKPPSYANEGPYS 861
           GYG    G  G +  YG ++S    +  GG YGG  +Y      Y    PYS
Sbjct: 134 GYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYGGNPPYS 185


>At3g14640.1 68416.m01853 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 514

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 457 DDPEARNLIIGRLCTLGLIQCDDEETQEKRTYVSP 561
           D P+A+  ++GRL   G+I  D ++  + R  ++P
Sbjct: 123 DYPKAQTFLLGRLIATGIINYDGDKWAKHRRIINP 157


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 556 SPDDLIYAQPVDIKPIGKPVASIPIRGPPRAYGPPKPM 669
           SP   IY+ P  +     PV S P   PP  Y PP P+
Sbjct: 544 SPPSPIYSPPPPVHSPPPPVYSSP--PPPHVYSPPPPV 579


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +1

Query: 757 VSNSNYQFSQSG---GIYGGEVNYXTKPPSYANEGPYSYD-ISKPNYTKVPSISQSAK-P 921
           + NS  +F   G   G+ G   NY  K   Y+N G +  D I++  YT     + SAK P
Sbjct: 394 IENSRGRFLYEGDNYGLTGSATNYYRKNWGYSNTGDFMDDAITEDTYTVSSESAVSAKYP 453

Query: 922 D 924
           D
Sbjct: 454 D 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,556,441
Number of Sequences: 28952
Number of extensions: 482274
Number of successful extensions: 1050
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)